; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008212 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008212
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:18550759..18554675
RNA-Seq ExpressionSpg008212
SyntenySpg008212
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-3451.1Show/hide
Query:  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQC
        S+ +  + ++F QPRQ +   E F R+F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC
Subjt:  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQC

Query:  SVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
          ST TR SAF+ L +STSK  + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK  V INTEGSL
Subjt:  SVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-3553.41Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++  QPRQ +   E F R+F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-3451.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-3551.91Show/hide
Query:  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQ
        S+ +  + ++F QPRQ +   E F R+F              H      F  +Y    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++Q
Subjt:  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQ

Query:  CSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        C  ST TR SAF+RL +STSK  + STS FDR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK FV INTEGSL
Subjt:  CSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-3451.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein7.8e-3551.1Show/hide
Query:  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQC
        S+ +  + ++F QPRQ +   E F R+F   H KE       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC
Subjt:  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQC

Query:  SVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
          ST TR SAF+ L +STSK  + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK  V INTEGSL
Subjt:  SVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein2.1e-3553.41Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++  QPRQ +   E F R+F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein1.3e-3451.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

A0A5D3BLW3 Retrotransposon gag protein2.1e-3551.91Show/hide
Query:  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQ
        S+ +  + ++F QPRQ +   E F R+F              H      F  +Y    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++Q
Subjt:  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQ

Query:  CSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        C  ST TR SAF+RL +STSK  + STS FDR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK FV INTEGSL
Subjt:  CSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

A0A5D3CCI8 Retrotransposon gag protein1.3e-3451.7Show/hide
Query:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST
        + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  
Subjt:  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTST

Query:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL
        R SAF+RL +STSK  + STS FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Subjt:  RPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGGCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAA
CGGTTCAAAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAATTCAGAGTTTCAAAGCTCTCAGGCAGAACCAGAGAATTCAGAGAGACTCCACCAAA
GAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAGAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGAC
GTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTATTCGATCGCATCAAGCCTCCAACTACTCGTCATTCGGTATTCCAGAGAATGAGTATGGCTGC
GACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAATAGCCAATTTTCAACATCTGTCTTTG
ATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCA
CGTATGAAGAGGAAGTTTTTTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCAAGCGCTTCGTTGCAGTTCTTTCTTTTCAATTTCGAAGGTTCTCAC
GCGTTTCATTGCAGTTCATTATTTCAAGTTTGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACA
CTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTT
GTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGT
TCGAAGGCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTT
GCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGC
TACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGGCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAA
CGGTTCAAAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAATTCAGAGTTTCAAAGCTCTCAGGCAGAACCAGAGAATTCAGAGAGACTCCACCAAA
GAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAGAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGAC
GTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTATTCGATCGCATCAAGCCTCCAACTACTCGTCATTCGGTATTCCAGAGAATGAGTATGGCTGC
GACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAATAGCCAATTTTCAACATCTGTCTTTG
ATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCA
CGTATGAAGAGGAAGTTTTTTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCAAGCGCTTCGTTGCAGTTCTTTCTTTTCAATTTCGAAGGTTCTCAC
GCGTTTCATTGCAGTTCATTATTTCAAGTTTGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACA
CTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTT
GTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGT
TCGAAGGCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTT
GCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGC
TACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA
Protein sequenceShow/hide protein sequence
MVEAKTDKAQAQVVRPESHQGPSSENSINRGVLLHFNGSKILDSSEILHSHKDKNSEFQSSQAEPENSERLHQRSKEFSQPRQPVIAKELFSRTFHKKEEGNFVTSYCID
VEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPS
RMKRKFFVLINTEGSLKFEGSQALRCSSFFSISKVLTRFIAVHYFKFEVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFSKFEGSQLYDCYV
VPPPSAKDLMLCVAALFPLLSSSKFLTRCVAVPSPKVRRLTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALRCSPFCSSSKVHTLRCFFAKFEGSHVALFLLQVRRFSR
YTASFSTFESSRATLLCLSFSKFEGSALM