; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008235 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008235
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold2:19010936..19013636
RNA-Seq ExpressionSpg008235
SyntenySpg008235
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]3.8e-1944.93Show/hide
Query:  KRTDHNRKK-------RRTHDNDRG-REDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI
        KRTD  R++        R    DR  ++DP  KF++YT T++P EQ+LMEI N  LL+ P +M  S   R K ++CLFH DH H T++C  LK+E+E LI
Subjt:  KRTDHNRKK-------RRTHDNDRG-REDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI

Query:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
         RG+LKE+VE+     P+ T+   G  D  P  EIRTI
Subjt:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.8e-2147.1Show/hide
Query:  KRTDHNRKK-------RRTHDNDR-GREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI
        KRTD  R++        R    DR  ++DP  KF++YTPT++P EQ+LMEI +  LL+ P +MK S   R K ++CLFHRDH H T++C  LK+E+E LI
Subjt:  KRTDHNRKK-------RRTHDNDR-GREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI

Query:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        RRG+LKE+VE+     P+ T+   G  D  P  EIRTI
Subjt:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]4.2e-1842.45Show/hide
Query:  KRTDHNRK---------KRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETL
        KR D  R+         K    D   G++D   KF++YTPT++P EQ+LMEI +  LL+ P  MK  P  R K ++CLFHRDH H T +C  LK+E+E L
Subjt:  KRTDHNRK---------KRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETL

Query:  IRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        IR+G+LKE+V+D       +    R   +  P  EIRTI
Subjt:  IRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.0e-1731.16Show/hide
Query:  VCSFAGLACHVFPCFYKFTMERNSEAAVGEVCHQARLQAQEVEIAALKGRMDDMRQNLTEILSLLKKPEYSGSKDDQLWNGRRGEPEPSRKKVRRSSPSR
        V  F G  C   P  Y  T+++ +  ++ +  + AR   ++++I           ++LT+++SLL     SG +D+ L +   G+  PS      S   R
Subjt:  VCSFAGLACHVFPCFYKFTMERNSEAAVGEVCHQARLQAQEVEIAALKGRMDDMRQNLTEILSLLKKPEYSGSKDDQLWNGRRGEPEPSRKKVRRSSPSR

Query:  PKQGTHVKIDGREKSEAREKSEAEHSRGGREQEPYKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGK
                   RE    R   + E S G + Q           + +++ D + +K           DP  KF++YTPT++P EQ+LMEI +  LL+ P +
Subjt:  PKQGTHVKIDGREKSEAREKSEAEHSRGGREQEPYKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGK

Query:  MKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        MK     R K ++CLFHRDH H T++   LK+E+E LIRRG+L+E+VE+     P+ T+   G  +  P  EIRTI
Subjt:  MKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]1.0e-1644.55Show/hide
Query:  KRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEF
        K      K++ +    +G +    +F  YTP ++P+EQ+LM+I N DLLR P  +K +P  RD+S++C +HRDHRH  ++C  LK+EI++LI+RG+LKEF
Subjt:  KRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEF

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A2N9F3B6 Ribonuclease H2.5e-1638.82Show/hide
Query:  REQEP--YKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNC
        R+QEP   K+LK S     KRT                  P+GKF  +TP + P E++LM+I +   LR PGK+ + P  R K+ +C FHRDH H T++C
Subjt:  REQEP--YKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNC

Query:  IQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDD---GPPLEIRTI
        + LK+++ETLIR+G L+++V      RP + +G + R  +   G   EIRTI
Subjt:  IQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDD---GPPLEIRTI

A0A6J1CNT2 uncharacterized protein LOC1110128051.8e-1944.93Show/hide
Query:  KRTDHNRKK-------RRTHDNDRG-REDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI
        KRTD  R++        R    DR  ++DP  KF++YT T++P EQ+LMEI N  LL+ P +M  S   R K ++CLFH DH H T++C  LK+E+E LI
Subjt:  KRTDHNRKK-------RRTHDNDRG-REDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI

Query:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
         RG+LKE+VE+     P+ T+   G  D  P  EIRTI
Subjt:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

A0A6J1DWY0 uncharacterized protein LOC1110252938.8e-2247.1Show/hide
Query:  KRTDHNRKK-------RRTHDNDR-GREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI
        KRTD  R++        R    DR  ++DP  KF++YTPT++P EQ+LMEI +  LL+ P +MK S   R K ++CLFHRDH H T++C  LK+E+E LI
Subjt:  KRTDHNRKK-------RRTHDNDR-GREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLI

Query:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        RRG+LKE+VE+     P+ T+   G  D  P  EIRTI
Subjt:  RRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

A0A6J1DYL6 uncharacterized protein LOC1110257852.9e-1731.16Show/hide
Query:  VCSFAGLACHVFPCFYKFTMERNSEAAVGEVCHQARLQAQEVEIAALKGRMDDMRQNLTEILSLLKKPEYSGSKDDQLWNGRRGEPEPSRKKVRRSSPSR
        V  F G  C   P  Y  T+++ +  ++ +  + AR   ++++I           ++LT+++SLL     SG +D+ L +   G+  PS      S   R
Subjt:  VCSFAGLACHVFPCFYKFTMERNSEAAVGEVCHQARLQAQEVEIAALKGRMDDMRQNLTEILSLLKKPEYSGSKDDQLWNGRRGEPEPSRKKVRRSSPSR

Query:  PKQGTHVKIDGREKSEAREKSEAEHSRGGREQEPYKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGK
                   RE    R   + E S G + Q           + +++ D + +K           DP  KF++YTPT++P EQ+LMEI +  LL+ P +
Subjt:  PKQGTHVKIDGREKSEAREKSEAEHSRGGREQEPYKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGK

Query:  MKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        MK     R K ++CLFHRDH H T++   LK+E+E LIRRG+L+E+VE+     P+ T+   G  +  P  EIRTI
Subjt:  MKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

A0A6J1DZ52 uncharacterized protein LOC1110256122.0e-1842.45Show/hide
Query:  KRTDHNRK---------KRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETL
        KR D  R+         K    D   G++D   KF++YTPT++P EQ+LMEI +  LL+ P  MK  P  R K ++CLFHRDH H T +C  LK+E+E L
Subjt:  KRTDHNRK---------KRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTDLLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETL

Query:  IRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI
        IR+G+LKE+V+D       +    R   +  P  EIRTI
Subjt:  IRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACTTCTATTCCAAGGCCAAAGGCCTTTCCATTTACTCTCTGTCTCTTCTTTGGCTGCTATTGGAAAATTCACACCTAACAGGAGCTGACGAGGACAATCGAAC
AGAGGAAGGACCAAAAGACCGACCCAGAGGAAGACCGGGCCAAAGGGTCGGGCCGACATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATAATG
GTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTTGGCCCGCTTGTGCGGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGACGCCCCGAATCGCCCCGGTTCCACCTGGT
TCGTCCCGAAACACCTCCAGATTCCTAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGTTTTGCTGGTCTTGCATGTCA
CGTCTTCCCCTGTTTCTACAAATTCACTATGGAGCGCAACAGTGAAGCAGCCGTAGGAGAAGTATGCCACCAGGCTCGACTTCAAGCCCAAGAAGTCGAAATAGCAGCAC
TCAAAGGAAGGATGGATGATATGAGACAGAATCTTACGGAGATTCTGAGTTTATTGAAGAAGCCCGAGTACTCGGGGAGCAAGGATGACCAACTGTGGAATGGCCGACGA
GGAGAGCCCGAGCCTAGTCGCAAGAAAGTTCGCAGAAGCTCGCCATCGAGGCCAAAGCAAGGTACGCATGTTAAAATCGATGGCAGGGAAAAATCCGAGGCTCGGGAAAA
GTCCGAGGCCGAGCATAGTCGAGGAGGGCGCGAGCAAGAGCCGTACAAATTGTTAAAGGAAAGTCCTTACAACTCATACAAGAGGACAGACCACAACCGCAAAAAACGGA
GAACACATGACAATGATCGAGGGCGAGAAGACCCCATGGGTAAATTCAAAGAATACACCCCCACTTCCATTCCGCAGGAACAAATATTGATGGAGATTACAAATACGGAT
CTTCTGAGACATCCTGGAAAAATGAAAACAAGTCCAGAAGGAAGAGATAAAAGCCAATTTTGTCTTTTCCACAGGGACCACAGACACACTACCAAAAATTGCATCCAGCT
TAAAGATGAGATTGAAACGCTGATTCGTCGTGGATTCCTCAAAGAGTTTGTTGAAGACAAGAGCCAGAAAAGGCCGAGGCAGACCAGGGGTGGCCGAGGCCGAGGAGATG
ATGGACCTCCTTTAGAGATTAGAACCATCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACTTCTATTCCAAGGCCAAAGGCCTTTCCATTTACTCTCTGTCTCTTCTTTGGCTGCTATTGGAAAATTCACACCTAACAGGAGCTGACGAGGACAATCGAAC
AGAGGAAGGACCAAAAGACCGACCCAGAGGAAGACCGGGCCAAAGGGTCGGGCCGACATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATAATG
GTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTTGGCCCGCTTGTGCGGGCCGAGCCCGGTGGCCTCTTTTCGGTCCCTGACGCCCCGAATCGCCCCGGTTCCACCTGGT
TCGTCCCGAAACACCTCCAGATTCCTAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGTTTTGCTGGTCTTGCATGTCA
CGTCTTCCCCTGTTTCTACAAATTCACTATGGAGCGCAACAGTGAAGCAGCCGTAGGAGAAGTATGCCACCAGGCTCGACTTCAAGCCCAAGAAGTCGAAATAGCAGCAC
TCAAAGGAAGGATGGATGATATGAGACAGAATCTTACGGAGATTCTGAGTTTATTGAAGAAGCCCGAGTACTCGGGGAGCAAGGATGACCAACTGTGGAATGGCCGACGA
GGAGAGCCCGAGCCTAGTCGCAAGAAAGTTCGCAGAAGCTCGCCATCGAGGCCAAAGCAAGGTACGCATGTTAAAATCGATGGCAGGGAAAAATCCGAGGCTCGGGAAAA
GTCCGAGGCCGAGCATAGTCGAGGAGGGCGCGAGCAAGAGCCGTACAAATTGTTAAAGGAAAGTCCTTACAACTCATACAAGAGGACAGACCACAACCGCAAAAAACGGA
GAACACATGACAATGATCGAGGGCGAGAAGACCCCATGGGTAAATTCAAAGAATACACCCCCACTTCCATTCCGCAGGAACAAATATTGATGGAGATTACAAATACGGAT
CTTCTGAGACATCCTGGAAAAATGAAAACAAGTCCAGAAGGAAGAGATAAAAGCCAATTTTGTCTTTTCCACAGGGACCACAGACACACTACCAAAAATTGCATCCAGCT
TAAAGATGAGATTGAAACGCTGATTCGTCGTGGATTCCTCAAAGAGTTTGTTGAAGACAAGAGCCAGAAAAGGCCGAGGCAGACCAGGGGTGGCCGAGGCCGAGGAGATG
ATGGACCTCCTTTAGAGATTAGAACCATCTTTTGA
Protein sequenceShow/hide protein sequence
MANFYSKAKGLSIYSLSLLWLLLENSHLTGADEDNRTEEGPKDRPRGRPGQRVGPTWPDPYGRPRPFAEAEHNGRPRQKAEADHLARLCGPSPVASFRSLTPRIAPVPPG
SSRNTSRFLKTLGGQTGIGGGVAYTTPVCSFAGLACHVFPCFYKFTMERNSEAAVGEVCHQARLQAQEVEIAALKGRMDDMRQNLTEILSLLKKPEYSGSKDDQLWNGRR
GEPEPSRKKVRRSSPSRPKQGTHVKIDGREKSEAREKSEAEHSRGGREQEPYKLLKESPYNSYKRTDHNRKKRRTHDNDRGREDPMGKFKEYTPTSIPQEQILMEITNTD
LLRHPGKMKTSPEGRDKSQFCLFHRDHRHTTKNCIQLKDEIETLIRRGFLKEFVEDKSQKRPRQTRGGRGRGDDGPPLEIRTIF