CuGenDBv2

Gene ID	Spg008250
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	4-hydroxy-tetrahydrodipicolinate synthase
Genome location	scaffold5:27429153..27437338
RNA-Seq Expression	Spg008250
Synteny	Spg008250
Gene Ontology terms	GO:0009089 - lysine biosynthetic process via diaminopimelate (biological process) GO:0019877 - diaminopimelate biosynthetic process (biological process) GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase (molecular function)
InterPro domains	IPR002220 - DapA-like IPR013785 - Aldolase-type TIM barrel

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582569.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

KAG7018953.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

XP_022980330.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita maxima]

1.7e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

XP_023528690.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.7e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

XP_038898920.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida]

5.8e-19

92.73

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AWB5 4-hydroxy-tetrahydrodipicolinate synthase

1.4e-18

90.91

Show/hide

Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT ADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

A0A5A7U5X2 4-hydroxy-tetrahydrodipicolinate synthase

1.4e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT ADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

A0A6J1CZ39 4-hydroxy-tetrahydrodipicolinate synthase

1.1e-18

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVN QIENGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

A0A6J1E8W7 4-hydroxy-tetrahydrodipicolinate synthase

8.1e-19

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

A0A6J1IVZ1 4-hydroxy-tetrahydrodipicolinate synthase

8.1e-19

90.91

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTSADDIKSLRLVTAIKTPYLPDGRFD+EAY+ALVNRQIENGA+ VIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

SwissProt top hits

e value

%identity

Alignment

P26259 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

3.0e-18

76.36

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTS DDI  LRL+TA+KTPYLPDGRFD+EAY++L+N QIE GA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Q39535 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

7.8e-19

78.18

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RTS DDI SLRL+TA+KTPYLPDGRFD+EAY++L+N QIE GA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Q42948 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

1.2e-19

83.64

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT ADDIK+LRL+TAIKTPYLPDGRFD+EAY+ LVN QIENGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Q9FVC8 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic

1.7e-18

78.18

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT+ DDIK+LR++TAIKTPYLPDGRFD+EAY+ LVN QI+NGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Q9LZX6 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic

1.0e-18

78.18

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT+ DDI+SLR++TAIKTPYLPDGRFD++AY+ LVN QIENGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Arabidopsis top hits

e value

%identity

Alignment

AT2G45440.1 dihydrodipicolinate synthase

1.2e-19

78.18

Show/hide

Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT+ DDIK+LR++TAIKTPYLPDGRFD+EAY+ LVN QI+NGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

AT3G60880.1 dihydrodipicolinate synthase 1

7.2e-20

78.18

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT+ DDI+SLR++TAIKTPYLPDGRFD++AY+ LVN QIENGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

AT3G60880.2 dihydrodipicolinate synthase 1

7.2e-20

78.18

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Query:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE
        +RT+ DDI+SLR++TAIKTPYLPDGRFD++AY+ LVN QIENGA+GVIVGGTTGE
Subjt:  HRTSADDIKSLRLVTAIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Sequences

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CDS sequence

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CTGAAACGAAGGATTGATCGCACCTTCAGATTTGAAACGCCAACACCCCCTCGTGTCCATGCCGCAGTCAGGAAGACCGAAAAACATCAATGCTTAGTAGTGGGTATTGT
TATAGGCAATTTTGGACCACCCGGCGCACAAGGAGCAGACGAGGACGTCCGGGCAAAAATAGGGCTGGGAGATCGACCCAGAGGAAGAACCGACCAAAGGGCCGGGCCAA
CTTGGCCCGACCCATATGGTCGGCCTCGGCCCAAGGCCAAGGCCGACCATTCGGCCCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCTGATGCTTCTAGCC
GCCTCGGTTTCGCCTAGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGACAAGTATGGTGACGTCGCATGGGATGTAAGGGAAAGTCGAGT
AGCGTCGTTTTCCCTCTCTCCCGTTTTCTCTTCTATTCGAGCGTCTCACAGCCGACGGCCTTCGCTTCTTCTTCTCCTTCATGAATCTTCATCAGCCGCCTGTGCCCTGT
TGTTCCCGTCTTCAAGCGTCGCCACCCGTGTCCCTGTTGTTCGCGTCTCCGGTGAGCAAAGTGCGGCAGTAGCAGCAGTTTCCAGTCGTGACCTCGGAGTGTGCAGACGT
GGGCGTGGGAGGAGTAGCGTGCAGGCTGTCTTCAGCGTATTTCCAGCGGTTTTGGTTTTGGGTATGTATTTTCCAGCAAGGTGTCAGGAAATTTTTGGATTTGCCTTATG
TATGTTGTTATGCTGTCGAATTTTCAGTAGCACAACGACTGGAGTGAGACTAAGCTTAGTAGATACTTCCATAATTAGACTAAGCTTATTAGGATCCCTCGATACATTAT
GCTCGATAGTCGTACGTACGGAAAGGGCAAGGCTTAGAATAGTAGCCTTAGATGTGATTCAGGGTCACAGGACATCAGCAGATGATATCAAGTCTCTTAGACTTGTAACT
GCCATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGAAGCCTTGGTGAACCGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGGTGGCAC
AACTGGTGAA

mRNA sequence

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Protein sequence

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LKRRIDRTFRFETPTPPRVHAAVRKTEKHQCLVVGIVIGNFGPPGAQGADEDVRAKIGLGDRPRGRTDQRAGPTWPDPYGRPRPKAKADHSARLRGPSSVTSSRSLMLLA
ASVSPSLSRNASEFLKTLGARADKYGDVAWDVRESRVASFSLSPVFSSIRASHSRRPSLLLLLHESSSAACALLFPSSSVATRVPVVRVSGEQSAAVAAVSSRDLGVCRR
GRGRSSVQAVFSVFPAVLVLGMYFPARCQEIFGFALCMLLCCRIFSSTTTGVRLSLVDTSIIRLSLLGSLDTLCSIVVRTERARLRIVALDVIQGHRTSADDIKSLRLVT
AIKTPYLPDGRFDIEAYEALVNRQIENGAKGVIVGGTTGE

Spg008250 (gene) of Sponge gourd (cylindrica) v1 genome