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Spg008256 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008256
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold5:27495338..27496541
RNA-Seq ExpressionSpg008256
SyntenySpg008256
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.5e-1060.27Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSGRHLVFVKSV
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +                Y++NQVMSG HLVF  SV
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSGRHLVFVKSV

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1250Show/hide
Query:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG
        E+  SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++SS                Y++NQVMSG
Subjt:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG

Query:  RHLVFV
         HL++V
Subjt:  RHLVFV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.8e-1162.16Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFVKSV
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SSY++NQVMSG HLVF  SV
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFVKSV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]6.7e-1662.79Show/hide
Query:  SLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFV
        SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS ++SSY++NQVMSG +LV+V
Subjt:  SLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFV

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1250Show/hide
Query:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG
        E+  SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++SS                Y++NQVMSG
Subjt:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG

Query:  RHLVFV
         HL++V
Subjt:  RHLVFV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein7.0e-1160.27Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSGRHLVFVKSV
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +                Y++NQVMSG HLVF  SV
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSGRHLVFVKSV

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein7.5e-1350Show/hide
Query:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG
        E+  SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++SS                Y++NQVMSG
Subjt:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG

Query:  RHLVFV
         HL++V
Subjt:  RHLVFV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.8e-1162.16Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFVKSV
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS ++SSY++NQVMSG HLVF  SV
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFVKSV

A0A5D3DE96 Uncharacterized protein3.3e-1662.79Show/hide
Query:  SLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFV
        SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS ++SSY++NQVMSG +LV+V
Subjt:  SLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFV

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein7.5e-1350Show/hide
Query:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG
        E+  SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTLP+S ES  ++SS                Y++NQVMSG
Subjt:  EHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSS----------------YYSNQVMSG

Query:  RHLVFV
         HL++V
Subjt:  RHLVFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCTTTAGGAGCAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTTATATGAACACCTTCAGAGTCTACAGACCAGGAAACTA
GCTAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTATTATTCGAACCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTAAAAGTGTTTTCAGGGATTCCGCT
GTGTTGCGTTTCATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGCTTTAGGAGCAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTTATATGAACACCTTCAGAGTCTACAGACCAGGAAACTA
GCTAAGACTATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTATTATTCGAACCAAGTTATGTCAGGGCGACACCTCGTGTTTGTTAAAAGTGTTTTCAGGGATTCCGCT
GTGTTGCGTTTCATGTAG
Protein sequenceShow/hide protein sequence
MHALGAKLNVLSAFDLQLLPHVLYEHLQSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSYYSNQVMSGRHLVFVKSVFRDSA
VLRFM