CuGenDBv2

Gene ID	Spg008259
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold5:27167307..27175480
RNA-Seq Expression	Spg008259
Synteny	Spg008259
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.6e-23

35.34

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F T + ++VRFQ++   + SQ K + IEDE E W +V  +K+++ S     S   Q   +   S +KKG+  KK  +SKP+  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+LAE+FPR F +D   E LE   CH  ++VE D+   S                                    EEVD+S E   + QRTSVF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        P   R+ VFQRLS+   EEE+  PT++ TR S F+ LS+         ST    RP  SAF  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.5e-21

33.71

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F T + ++VRFQ++   +  Q K + IEDE E W +V  +K+++ S    +S   Q   +   S +KKG+  KK  + KP+ E+ E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        + I+LAE+FPR F +D   E LE   CH  ++VE D+   S                                    EEVD+S E   + QRTSVF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRPSAFQSMKM
        P   R+ VFQRLS+   EEE+  P ++ TR S F+RLS+       + S  +    SAF  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRPSAFQSMKM

KAA0062063.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

2.3e-22

34.34

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F+T   ++VRFQ++  M  SQ K + I+D+ + W +V R+K+++ ++   +S   Q   +   S + KGK  KK  +SKP+  + + F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        + I+L E+FPR F  D+  E LE   CH+V+VVE D+   SS                                   EEVD+S E   + QRT VF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMK
        PS  R+ VFQRLS+   EEE+  P ++ST+ S F+RLS+         ST    RP  SAF  +K
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMK

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]

5.2e-22

34.21

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ K+L +F   + ++V+FQ++ T + SQ K + IEDE + W +V  +K+++ S    +S   Q   +     +KKG+  KK R+ K +  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+L E+ PRRF +D   E LE   CH V++VE D+   SS                                   +EVD S E   + +RTS+F RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        PS  R+ VFQRLS+   EEE+  PT+ STR S F+RLS+         ST    RP  S F  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]

5.2e-22

34.21

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ K+L +F   + ++V+FQ++ T + SQ K + IEDE + W +V  +K+++ S    +S   Q   +     +KKG+  KK R+ K +  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+L E+ PRRF +D   E LE   CH V++VE D+   SS                                   +EVD S E   + +RTS+F RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        PS  R+ VFQRLS+   EEE+  PT+ STR S F+RLS+         ST    RP  S F  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGM1 Retrotransposon gag protein

7.8e-24

35.34

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F T + ++VRFQ++   + SQ K + IEDE E W +V  +K+++ S     S   Q   +   S +KKG+  KK  +SKP+  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+LAE+FPR F +D   E LE   CH  ++VE D+   S                                    EEVD+S E   + QRTSVF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        P   R+ VFQRLS+   EEE+  PT++ TR S F+ LS+         ST    RP  SAF  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

A0A5A7U974 Retrotransposon gag protein

7.3e-22

33.71

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F T + ++VRFQ++   +  Q K + IEDE E W +V  +K+++ S    +S   Q   +   S +KKG+  KK  + KP+ E+ E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        + I+LAE+FPR F +D   E LE   CH  ++VE D+   S                                    EEVD+S E   + QRTSVF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRPSAFQSMKM
        P   R+ VFQRLS+   EEE+  P ++ TR S F+RLS+       + S  +    SAF  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRPSAFQSMKM

A0A5A7V1P3 Ty3-gypsy retrotransposon protein

1.1e-22

34.34

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ + L +F+T   ++VRFQ++  M  SQ K + I+D+ + W +V R+K+++ ++   +S   Q   +   S + KGK  KK  +SKP+  + + F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        + I+L E+FPR F  D+  E LE   CH+V+VVE D+   SS                                   EEVD+S E   + QRT VF RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMK
        PS  R+ VFQRLS+   EEE+  P ++ST+ S F+RLS+         ST    RP  SAF  +K
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMK

A0A5A7V4E9 Retrotransposon gag protein

2.5e-22

34.21

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ K+L +F   + ++V+FQ++ T + SQ K + IEDE + W +V  +K+++ S    +S   Q   +     +KKG+  KK R+ K +  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+L E+ PRRF +D   E LE   CH V++VE D+   SS                                   +EVD S E   + +RTS+F RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        PS  R+ VFQRLS+   EEE+  PT+ STR S F+RLS+         ST    RP  S F  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

A0A5D3DVW2 Retrotransposon gag protein

2.5e-22

34.21

Show/hide

Query:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP
        ++ K+L +F   + ++V+FQ++ T + SQ K + IEDE + W +V  +K+++ S    +S   Q   +     +KKG+  KK R+ K +  + E F  P 
Subjt:  NEGKKLFEFKTLDLVVVRFQKEATMNGSQEKYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGK--KKSRRSKPVVEESEVFFCPP

Query:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR
        Q I+L E+ PRRF +D   E LE   CH V++VE D+   SS                                   +EVD S E   + +RTS+F RI+
Subjt:  QPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIR

Query:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM
        PS  R+ VFQRLS+   EEE+  PT+ STR S F+RLS+         ST    RP  S F  +KM
Subjt:  PSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPNVTRP--SAFQSMKM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTCTGTGAAGCACGTTGGAAAAGAAGATACATGGCAGGAGCCTATGGCTGCACCTTCCCGTGAAAGAAATCAGGTCGTGGCAGACTATCACAGAAAATACGATGG
ATTCTGTGAAGTGATGCTTGAAAGATGGGAAAAGAGGGTAGTTGAGGCAACCAAGAAGGCCGAGGATCTTACTGGGAATATGTGGCGGCACTACCCTGTGGGTTTTTTTA
GGAAGAAGAGATGTGGATTTGGGGATGGGGGAGGGGAGAGAAGAGGAAGGAGGGGATTCAAAGGTGGGGGAGATGTAAATGGTGCCAAGAAGATGAGGGGGTGGTTTTGG
TGTTGGAGGGTGGTGATGGTGGACAGGAGGGAGAGGAAGAAGAAGAGAAAAAAGAAGGGGGGGGCGTTTCCAATCAACATGATGGCACCAAAGAAAGCTCCCGCGAAGGT
TACCACATCAAGCGACTCTTACACTGGTCCTGTCACTCGTAGTCGATCCCAAGGAATTGAGATCAAGGATCATACTCCTCTTGCTACCAGGATGAAAGAATGGCAGAGAT
GGAAAGAAACTCAATCTCTTAATGAAGGCAAAAAGTTGTTTGAATTTAAGACCCTTGATCTCGTAGTGGTTCGATTCCAAAAAGAAGCCACAATGAATGGATCCCAAGAA
AAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTATGCATGGAAAGAGTCCCGCCTATTTCAAGATAGTAA
AAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGTTTTCTTTTGCCCTCCACAACCCATAAGTTTGG
CAGAATATTTCCCAAGGCGCTTTCGAGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTAAACGTGGTGGAAGATGATGACGTCCCTACTAGCTCC
TCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTAGCCGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGATATAACAGTAGAGGA
GGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCATCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATG
AAACGGAAGAAGAGAGCACACAACCTACCAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGAGGAAGAAGAGAGTACATTTTCAACTCCGAAT
GTCACTCGACCTTCAGCTTTCCAAAGTATGAAGATGCGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDSVKHVGKEDTWQEPMAAPSRERNQVVADYHRKYDGFCEVMLERWEKRVVEATKKAEDLTGNMWRHYPVGFFRKKRCGFGDGGGERRGRRGFKGGGDVNGAKKMRGWFW
CWRVVMVDRRERKKKRKKKGGAFPINMMAPKKAPAKVTTSSDSYTGPVTRSRSQGIEIKDHTPLATRMKEWQRWKETQSLNEGKKLFEFKTLDLVVVRFQKEATMNGSQE
KYDSIEDENEGWTLVVRRKKQKQSYAWKESRLFQDSKRKVKSQRKKGKKKSRRSKPVVEESEVFFCPPQPISLAEYFPRRFRDDSQGEALETVTCHIVNVVEDDDVPTSS
SGTVAGPGDLSSFSIKDLLAGSHNKKREGESDITVEEVDDSKEKESVDQRTSVFRRIRPSVARALVFQRLSVNETEEESTQPTNSSTRPSVFRRLSMPIEEEESTFSTPN
VTRPSAFQSMKMR

Spg008259 (gene) of Sponge gourd (cylindrica) v1 genome