CuGenDBv2

Gene ID	Spg008266
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type domain-containing protein
Genome location	scaffold5:26559439..26560677
RNA-Seq Expression	Spg008266
Synteny	Spg008266
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022131399.1 RING-H2 finger protein ATL47-like [Momordica charantia]

3.6e-39

54.3

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYRL+RSSSSCKDS+K+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        IKDFY                          VIL SLQRLQAN ++LD+A ++RVK+DNS+++R QGDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

XP_022962105.1 E3 ubiquitin-protein ligase CHFR-like isoform X1 [Cucurbita moschata]

4.8e-39

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +K+FY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

XP_022962108.1 uncharacterized protein LOC111462660 isoform X2 [Cucurbita moschata]

4.8e-39

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +K+FY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

XP_022996708.1 uncharacterized protein LOC111491874 [Cucurbita maxima]

1.6e-39

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEED+ RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +KDFY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGKH N DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

XP_023546493.1 E3 ubiquitin-protein ligase CHFR-like [Cucurbita pepo subsp. pepo]

1.1e-38

54.84

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YY ++R  SSCKDSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +K+FY                          +IL SLQRLQA+AE+LDNAK K VKSDNS+ERRV+GDGKHSN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BB06 uncharacterized protein LOC103487741

1.5e-38

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYRL  + SSC DSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +KDFY                          VIL SLQRLQAN E+ DNAKEK  KSDNSSERR+QGDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

A0A6J1BQ55 RING-H2 finger protein ATL47-like

1.8e-39

54.3

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYRL+RSSSSCKDS+K+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        IKDFY                          VIL SLQRLQAN ++LD+A ++RVK+DNS+++R QGDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

A0A6J1HBV1 E3 ubiquitin-protein ligase CHFR-like isoform X1

2.3e-39

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +K+FY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

A0A6J1HDV0 uncharacterized protein LOC111462660 isoform X2

2.3e-39

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEEDV RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +K+FY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGK SN DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

A0A6J1KBT4 uncharacterized protein LOC111491874

7.9e-40

55.38

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT
        +YYR++R  SSCKDSLK+LEED+ RANAL AAIPRAKHGSYLQMKL                                     VYTDGRPNIS HGRKAT
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL-------------------------------------VYTDGRPNISTHGRKAT

Query:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +KDFY                          +IL SLQRLQA+AE+LDNAK K VKSDNSSERRV+GDGKH N DLEREDECGICL
Subjt:  IKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

SwissProt top hits

e value

%identity

Alignment

Q9M022 E3 ubiquitin-protein ligase AIRP2

3.1e-09

27.91

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Query:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL
        S KDSLK LE D+  AN L +  P    G Y+QM+L                                  Y DG+  +S H RK +I++FY    P    
Subjt:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL

Query:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
                             SL +L      ++  K+K +      ++     GK S  DLERE+ECGICL
Subjt:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

Arabidopsis top hits

e value

%identity

Alignment

AT1G13195.1 RING/U-box superfamily protein

3.9e-15

34.59

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Query:  SRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVY-------------------------------------TDGRPNISTHGRKATIKDFY
        S SSSS  +SLK+LE DV  AN+L  AIP  K+   LQMKLV+                                     +DG+P ++THGRKATI +FY
Subjt:  SRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVY-------------------------------------TDGRPNISTHGRKATIKDFY

Query:  GTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNA----KEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        G                         VIL SLQ L +N ++L+        KR+    + E R     + SN  LERE+ECGICL
Subjt:  GTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNA----KEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

AT1G24440.1 RING/U-box superfamily protein

1.5e-14

34.41

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Query:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVYT-----------------------------------DGRPNISTHGRKATIK
        +YY+L++  SS +DSLKILE D+  AN L A IP  K G  LQMKLV +                                   DGR N S +GRKATI+
Subjt:  LYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVYT-----------------------------------DGRPNISTHGRKATIK

Query:  DFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQL--DNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
        +FYG                         VIL SL+RL  N   L  ++      K+    +  ++G    ++ DLEREDECGICL
Subjt:  DFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQRLQANAEQL--DNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

AT3G47160.1 RING/U-box superfamily protein

2.9e-10

29.65

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Query:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVYT---------------------------------DGRPNISTHGRKATIKDFYGTCLPNKSL
        S KDSLK LE D+  AN +    PR K G+ +QM+L YT                                 DG+  +S + RK +IKDFY         
Subjt:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVYT---------------------------------DGRPNISTHGRKATIKDFYGTCLPNKSL

Query:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
                         VI  SL +L+     LD+ K+K V       +      K S  D+ERE+ECGIC+
Subjt:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

AT5G01520.1 RING/U-box superfamily protein

2.2e-10

27.91

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Query:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL
        S KDSLK LE D+  AN L +  P    G Y+QM+L                                  Y DG+  +S H RK +I++FY    P    
Subjt:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL

Query:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
                             SL +L      ++  K+K +      ++     GK S  DLERE+ECGICL
Subjt:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

AT5G01520.2 RING/U-box superfamily protein

2.2e-10

27.91

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Query:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL
        S KDSLK LE D+  AN L +  P    G Y+QM+L                                  Y DG+  +S H RK +I++FY    P    
Subjt:  SCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKL---------------------------------VYTDGRPNISTHGRKATIKDFYGTCLPNKSL

Query:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL
                             SL +L      ++  K+K +      ++     GK S  DLERE+ECGICL
Subjt:  FWSLFMSFVYNKLHTSVVILSSLQRLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

Sequences

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CDS sequence

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ATGTTATCACTCAGTACACTCCCTTTCTTGTATTATCGGCTATCGAGGTCTTCTAGTTCTTGTAAGGATTCTCTGAAAATCCTCGAAGAAGATGTAAATCGTGCCAATGC
TCTGCCTGCTGCAATTCCAAGAGCCAAACATGGTTCATATCTCCAAATGAAATTGGTTTACACAGATGGAAGGCCTAATATATCAACACATGGAAGAAAGGCAACTATCA
AAGATTTCTATGGTACATGTTTGCCTAATAAGAGTCTGTTTTGGAGTCTGTTTATGAGCTTTGTTTATAACAAACTTCATACTTCAGTTGTCATCTTGTCATCCCTTCAA
CGGCTCCAAGCGAACGCCGAACAGTTGGATAATGCTAAAGAGAAGCGTGTCAAGTCCGATAATTCTAGTGAGAGAAGAGTCCAAGGAGATGGAAAACACTCCAATTGTGA
TTTAGAGAGAGAAGATGAGTGTGGGATTTGCTTATAA

mRNA sequence

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Protein sequence

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MLSLSTLPFLYYRLSRSSSSCKDSLKILEEDVNRANALPAAIPRAKHGSYLQMKLVYTDGRPNISTHGRKATIKDFYGTCLPNKSLFWSLFMSFVYNKLHTSVVILSSLQ
RLQANAEQLDNAKEKRVKSDNSSERRVQGDGKHSNCDLEREDECGICL

Spg008266 (gene) of Sponge gourd (cylindrica) v1 genome