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Spg008268 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008268
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGypsy-like retrotransposase
Genome locationscaffold5:27368010..27378136
RNA-Seq ExpressionSpg008268
SyntenySpg008268
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039307.1 uncharacterized protein E6C27_scaffold64G001020 [Cucumis melo var. makuwa]6.2e-1234.39Show/hide
Query:  HIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADARKERVE--------DVQASDLKRG------------------
        H ++  E++ +P  S        +LS F++  LLSLPQE K+ILI+AL+ S    + A     E        D    DL  G                  
Subjt:  HIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADARKERVE--------DVQASDLKRG------------------

Query:  ----------------------ETSTCLEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
                                 + L   +KKLL EG+ +P +RKGL YKSPEP RI R+EK KV D NHITV+EVD  +EKE   Q
Subjt:  ----------------------ETSTCLEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

KAA0059584.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-0453.12Show/hide
Query:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE
        K+NPLYD    AS + K   +PDVMSVMMAD   +  MAEMERK+N LMK  E  D+   A+ E
Subjt:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE

KAA0059584.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-0963.79Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE
        L   +KKLL+EGY +P +RKGL YKSPEP RI R+ K KV D+NHIT+EEVD  +EKE
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE

TYK19174.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]3.7e-0963.79Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE
        L   +KKLL+EGY +P +RKGL YKSPEP RI R+ K KV D+NHIT+EEVD  +EKE
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE

TYK25790.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0964.52Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
        L   KKKLL+EG+ +P +RKGL YKSPEP RI R+ K KV D NHITVEEVD  KEKE   Q
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

TYK25790.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-0453.12Show/hide
Query:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE
        K+NPLYD    AS + K   +PDVMSVMMAD   +  MAEMERK+N LMK  E  D+   A+ E
Subjt:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE

TYK25790.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0964.52Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
        L   KKKLL+EG+ +P +RKGL YKSPEP RI R+ K KV D NHITVEEVD  KEKE   Q
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

TrEMBL top hitse value%identityAlignment
A0A5A7TCJ6 Uncharacterized protein3.0e-1234.39Show/hide
Query:  HIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADARKERVE--------DVQASDLKRG------------------
        H ++  E++ +P  S        +LS F++  LLSLPQE K+ILI+AL+ S    + A     E        D    DL  G                  
Subjt:  HIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADARKERVE--------DVQASDLKRG------------------

Query:  ----------------------ETSTCLEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
                                 + L   +KKLL EG+ +P +RKGL YKSPEP RI R+EK KV D NHITV+EVD  +EKE   Q
Subjt:  ----------------------ETSTCLEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

A0A5A7UEE4 RNase H domain-containing protein1.8e-0963.79Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE
        L   +KKLL+EGY +P +RKGL YKSPEP RI R+ K KV D+NHIT+EEVD  +EKE
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE

A0A5A7UWW2 Ty3-gypsy retrotransposon protein3.0e-0453.12Show/hide
Query:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE
        K+NPLYD    AS + K   +PDVMSVMMAD   +  MAEMERK+N LMK  E  D+   A+ E
Subjt:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE

A0A5A7UWW2 Ty3-gypsy retrotransposon protein1.4e-0138.89Show/hide
Query:  LDDSQREAFETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADA
        LD  + E    V CH ++  E++ +P  S        DLS F++  LLSLPQE K+ILI+AL+ S    + A
Subjt:  LDDSQREAFETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADA

A0A5A7UWW2 Ty3-gypsy retrotransposon protein1.8e-0963.79Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE
        L   +KKLL+EGY +P +RKGL YKSPEP RI R+ K KV D+NHIT+EEVD  +EKE
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE

A0A5D3DR73 Ty3-gypsy retrotransposon protein1.4e-0964.52Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
        L   KKKLL+EG+ +P +RKGL YKSPEP RI R+ K KV D NHITVEEVD  KEKE   Q
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

A0A5D3DR73 Ty3-gypsy retrotransposon protein3.0e-0453.12Show/hide
Query:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE
        K+NPLYD    AS + K   +PDVMSVMMAD   +  MAEMERK+N LMK  E  D+   A+ E
Subjt:  KDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERMAEMERKLNLLMK-AEMVDWSYSAILE

A0A5D3DR73 Ty3-gypsy retrotransposon protein1.4e-0138.89Show/hide
Query:  LDDSQREAFETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADA
        LD  + E    V CH ++  E++ +P  S        DLS F++  LLSLPQE K+ILI+AL+ S    + A
Subjt:  LDDSQREAFETVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKVLLSLPQEAKSILIDALMGSGEPQADA

A0A5D3DR73 Ty3-gypsy retrotransposon protein1.4e-0964.52Show/hide
Query:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ
        L   KKKLL+EG+ +P +RKGL YKSPEP RI R+ K KV D NHITVEEVD  KEKE   Q
Subjt:  LEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKESVDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATTCGGAATCTACAGCTCCGCGTCGCCCTTAATTTCAAAATGCACAAAATTCAGTTGGATTTACCAAGCAAAATTTTCCAAGAAACGGATACAACGACTAACTC
CGGTAGAACAGCAACCTTGAACTACATGGATCTGGCAGAACTCTTGGATACTTGCTCTCAACAAAATCAAAAGGAAAATAAAGGAAAAGCTGCAGAATACAGAAGTAAAG
ACAACCCGCTGTACGATTTTGTCATTCCAGCATCTGAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGCAGACCAGGATGAAAGAATG
GCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGAGCAGAAACAGAGAGGATTAAGGCTGA
AGCAAAGGGAGCAAGGGGGAATCAACCCATCGTTCGTGGGGATCGTGACGGGGACGCTCGGTCTCGGCCTACATTGAAATACTTCCCAAGGCGCTTTCTCGATGATAGTC
AAAGAGAGGCCTTTGAAACTGTCACATGTCACATTGTGGACGTGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGGAACGGTGGCGGGTCCAGGAGACTTATCTTCC
TTCAGCATAAAAGTCTTATTGTCACTTCCCCAAGAAGCTAAAAGCATCCTTATTGATGCATTGATGGGGTCTGGTGAACCACAAGCTGATGCAAGAAAGGAACGTGTTGA
AGATGTGCAGGCATCCGACCTGAAAAGGGGTGAAACATCTACATGCCTTGAGAAACCTAAGAAGAAGCTTCTAAAGGAGGGTTATAGTCTGCCTACAACGAGAAAAGGAC
TTGAATATAAGTCGCCTGAGCCAGATCGCATAATAAGAAGAGAGAAGGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAG
AGTGTCGACCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATTCGGAATCTACAGCTCCGCGTCGCCCTTAATTTCAAAATGCACAAAATTCAGTTGGATTTACCAAGCAAAATTTTCCAAGAAACGGATACAACGACTAACTC
CGGTAGAACAGCAACCTTGAACTACATGGATCTGGCAGAACTCTTGGATACTTGCTCTCAACAAAATCAAAAGGAAAATAAAGGAAAAGCTGCAGAATACAGAAGTAAAG
ACAACCCGCTGTACGATTTTGTCATTCCAGCATCTGAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGCAGACCAGGATGAAAGAATG
GCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGAGCAGAAACAGAGAGGATTAAGGCTGA
AGCAAAGGGAGCAAGGGGGAATCAACCCATCGTTCGTGGGGATCGTGACGGGGACGCTCGGTCTCGGCCTACATTGAAATACTTCCCAAGGCGCTTTCTCGATGATAGTC
AAAGAGAGGCCTTTGAAACTGTCACATGTCACATTGTGGACGTGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGGAACGGTGGCGGGTCCAGGAGACTTATCTTCC
TTCAGCATAAAAGTCTTATTGTCACTTCCCCAAGAAGCTAAAAGCATCCTTATTGATGCATTGATGGGGTCTGGTGAACCACAAGCTGATGCAAGAAAGGAACGTGTTGA
AGATGTGCAGGCATCCGACCTGAAAAGGGGTGAAACATCTACATGCCTTGAGAAACCTAAGAAGAAGCTTCTAAAGGAGGGTTATAGTCTGCCTACAACGAGAAAAGGAC
TTGAATATAAGTCGCCTGAGCCAGATCGCATAATAAGAAGAGAGAAGGCGAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAG
AGTGTCGACCAATGA
Protein sequenceShow/hide protein sequence
MQIRNLQLRVALNFKMHKIQLDLPSKIFQETDTTTNSGRTATLNYMDLAELLDTCSQQNQKENKGKAAEYRSKDNPLYDFVIPASEQPKDTLNPDVMSVMMADADQDERM
AEMERKLNLLMKAEMVDWSYSAILELIGAETERIKAEAKGARGNQPIVRGDRDGDARSRPTLKYFPRRFLDDSQREAFETVTCHIVDVVEDDDVPASSSGTVAGPGDLSS
FSIKVLLSLPQEAKSILIDALMGSGEPQADARKERVEDVQASDLKRGETSTCLEKPKKKLLKEGYSLPTTRKGLEYKSPEPDRIIRREKAKVADTNHITVEEVDDSKEKE
SVDQ