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Spg008274 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008274
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:27129711..27130578
RNA-Seq ExpressionSpg008274
SyntenySpg008274
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.1e-2770.19Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ES            VMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPG
          PG
Subjt:  GGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2372.53Show/hide
Query:  VEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  VEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-2664.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E        V+VE F ++    GIVR DDVCWLHAVF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGGGVL
        RAK AGGPGGGV+
Subjt:  RAKLAGGPGGGVL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.3e-2373.03Show/hide
Query:  IELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        IELPVPDTLPTSAESSGS+SSTWLELY ES            VMS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  IELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-2664.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E        V+VE F ++    GIVR DDVCWLHAVF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGGGVL
        RAK AGGPGGGV+
Subjt:  RAKLAGGPGGGVL

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein5.5e-2870.19Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ES            VMSGLH V    F+VS+GSTGIVRGDDVCWLHAVFR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLA

Query:  GGPG
          PG
Subjt:  GGPG

A0A5A7V9N3 Reverse transcriptase1.1e-2372.53Show/hide
Query:  VEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELPVPDTLPTSAESS S+SSTWLELY ES            VMS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  VEIELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7VMG9 Reverse transcriptase1.8e-2664.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E        V+VE F ++    GIVR DDVCWLHAVF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGGGVL
        RAK AGGPGGGV+
Subjt:  RAKLAGGPGGGVL

A0A5D3CJX3 CCHC-type domain-containing protein6.3e-2473.03Show/hide
Query:  IELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        IELPVPDTLPTSAESSGS+SSTWLELY ES            VMS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  IELPVPDTLPTSAESSGSSSSTWLELYIES------------VMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3DX39 Reverse transcriptase1.8e-2664.6Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E        V+VE F ++    GIVR DDVCWLHAVF
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGGGVL
        RAK AGGPGGGV+
Subjt:  RAKLAGGPGGGVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTGGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTG
ACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTGGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTG
ACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCTTATAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSGSSSSTWLELYIESVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVL