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Spg008279 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008279
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:27186298..27188866
RNA-Seq ExpressionSpg008279
SyntenySpg008279
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.1e-2360.91Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNV------------LFNV
        MQSQPLQ+L +T      LF LSY EG KRPRGNR SLQTGKLDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  +            L  V
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNV------------LFNV

Query:  QEGQRVSLEE
         +GQ+ SLEE
Subjt:  QEGQRVSLEE

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-3053.33Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--
        MQSQPLQ+L +T      LFGL Y EG KRPRGNR+SLQTG+LDKT                 VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+  
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                   ++++FNV  G    +  D+V WLHA+F AK AGGPGGGV
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.4e-2650.71Show/hide
Query:  CQPLVFLFGLSYTEGIK----------------------RPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ-
        CQPL+ LFGLSY E ++                       PRGNR +L TGKLDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +    
Subjt:  CQPLVFLFGLSYTEGIK----------------------RPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ-

Query:  ---------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                 EG    +  DD+ WLHA+F AK AG PGGGV
Subjt:  ---------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.3e-2340.82Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKT-------
        MQSQPLQ+L +T      LF LSY EG K                                                PRGNR SLQT +LDKT       
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKT-------

Query:  --------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  --------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.9e-2645.3Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTV---------------EIELPV
        MQSQPLQ+L +T      LF LSY EG K                                 PRGNR SLQTG+LDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTV---------------EIELPV

Query:  PDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        PDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  PDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein5.4e-2460.91Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNV------------LFNV
        MQSQPLQ+L +T      LF LSY EG KRPRGNR SLQTGKLDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  +            L  V
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNV------------LFNV

Query:  QEGQRVSLEE
         +GQ+ SLEE
Subjt:  QEGQRVSLEE

A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.0e-3053.33Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--
        MQSQPLQ+L +T      LFGL Y EG KRPRGNR+SLQTG+LDKT                 VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+  
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                   ++++FNV  G    +  D+V WLHA+F AK AGGPGGGV
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein6.9e-2750.71Show/hide
Query:  CQPLVFLFGLSYTEGIK----------------------RPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ-
        CQPL+ LFGLSY E ++                       PRGNR +L TGKLDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +    
Subjt:  CQPLVFLFGLSYTEGIK----------------------RPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ-

Query:  ---------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                 EG    +  DD+ WLHA+F AK AG PGGGV
Subjt:  ---------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein2.1e-2340.82Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKT-------
        MQSQPLQ+L +T      LF LSY EG K                                                PRGNR SLQT +LDKT       
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKT-------

Query:  --------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
                V IELPVPD LPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  --------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein9.0e-2745.3Show/hide
Query:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTV---------------EIELPV
        MQSQPLQ+L +T      LF LSY EG K                                 PRGNR SLQTG+LDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQPLVFLFGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTV---------------EIELPV

Query:  PDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        PDTLPTSAESS ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  PDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAG
TCTACAAACTGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGT
TGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCT
AAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACAGTTGCACACGCTCAAATCAAACTCATGCACAAAGGAATAACAACTGGAGAAGGCGCCACTTTGACCATATACATAAT
TGTGTTGAAATTGCGTATTGGTTGTCTGTTGAAGAGACGACCATCTCCAGTTGGCTTGCACATCGTTTCTTCAAGAGACGACATGTTGATTTGTATTAATGTTGTATGCG
TATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAG
TCTACAAACTGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGT
TGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCT
AAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACAGTTGCACACGCTCAAATCAAACTCATGCACAAAGGAATAACAACTGGAGAAGGCGCCACTTTGACCATATACATAAT
TGTGTTGAAATTGCGTATTGGTTGTCTGTTGAAGAGACGACCATCTCCAGTTGGCTTGCACATCGTTTCTTCAAGAGACGACATGTTGATTTGTATTAATGTTGTATGCG
TATGA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLVFLFGLSYTEGIKRPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRA
KLAGGPGGGVTVAHAQIKLMHKGITTGEGATLTIYIIVLKLRIGCLLKRRPSPVGLHIVSSRDDMLICINVVCV