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Spg008283 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008283
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:26832793..26835073
RNA-Seq ExpressionSpg008283
SyntenySpg008283
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-1950.81Show/hide
Query:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++LY ESV +   +L  +PS  RAA+        EG    + 
Subjt:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVT
         DDVCWLHA+FR K AGG GGGVT
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.3e-2057.55Show/hide
Query:  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAG
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW++LY ESV +   +L  +PS VR A+        EG    +  DD+CWLHAVF  K AG
Subjt:  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAG

Query:  GLGGGV
          GGGV
Subjt:  GLGGGV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]6.4e-2052.38Show/hide
Query:  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR SL+T EL KT                 VEIELPVPDTLPTSAES  ++SSTW++LY E V +   +L  +PS VRAA+        EG    + 
Subjt:  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVTFR
         DDVCWLH VFR K+AGG GGGVT R
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVTFR

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.9e-1848.8Show/hide
Query:  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSL
        +  PRGNRLSL+T EL KTV                IELPVPDTLPTSAESS ++SSTW++LY ESV +   +  S  + V +    + + +  G    +
Subjt:  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSL

Query:  EEDDVCWLHAVFRTKLAGGLGGGVT
          DDVCWLHAVFR K  GG GGGVT
Subjt:  EEDDVCWLHAVFRTKLAGGLGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-1950.81Show/hide
Query:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++LY ESV +   +L  +PS  RAA+        EG    + 
Subjt:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVT
         DDVCWLHA+FR K AGG GGGVT
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.6e-1950.81Show/hide
Query:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++LY ESV +   +L  +PS  RAA+        EG    + 
Subjt:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVT
         DDVCWLHA+FR K AGG GGGVT
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVT

A0A5A7UAH6 CCHC-type domain-containing protein6.3e-2157.55Show/hide
Query:  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAG
        PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW++LY ESV +   +L  +PS VR A+        EG    +  DD+CWLHAVF  K AG
Subjt:  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAG

Query:  GLGGGV
          GGGV
Subjt:  GLGGGV

A0A5A7VIY9 Uncharacterized protein3.1e-2052.38Show/hide
Query:  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR SL+T EL KT                 VEIELPVPDTLPTSAES  ++SSTW++LY E V +   +L  +PS VRAA+        EG    + 
Subjt:  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVTFR
         DDVCWLH VFR K+AGG GGGVT R
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVTFR

A0A5D3CJX3 CCHC-type domain-containing protein3.8e-1848.8Show/hide
Query:  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSL
        +  PRGNRLSL+T EL KTV                IELPVPDTLPTSAESS ++SSTW++LY ESV +   +  S  + V +    + + +  G    +
Subjt:  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSL

Query:  EEDDVCWLHAVFRTKLAGGLGGGVT
          DDVCWLHAVFR K  GG GGGVT
Subjt:  EEDDVCWLHAVFRTKLAGGLGGGVT

A0A5D3DR18 Gag/pol protein2.6e-1950.81Show/hide
Query:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE
        PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++LY ESV +   +L  +PS  RAA+        EG    + 
Subjt:  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLE

Query:  EDDVCWLHAVFRTKLAGGLGGGVT
         DDVCWLHA+FR K AGG GGGVT
Subjt:  EDDVCWLHAVFRTKLAGGLGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTCCTCTGGTGTTTTGAGCATTCTGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCATATTGGTTGGGAATCTCG
TTTTCATTTCTTCAGGCCAAGAGGAAATAGGTTGAGTCTAAAGACCAAGGAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGACTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGGCAACCCCG
TGTATGTTGGATGGTCTCAGGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGG
TGTGACATTTCGTCAGGTGGTTTGGACGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTCCTCTGGTGTTTTGAGCATTCTGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCATATTGGTTGGGAATCTCG
TTTTCATTTCTTCAGGCCAAGAGGAAATAGGTTGAGTCTAAAGACCAAGGAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGACTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGGCAACCCCG
TGTATGTTGGATGGTCTCAGGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGG
TGTGACATTTCGTCAGGTGGTTTGGACGACATAA
Protein sequenceShow/hide protein sequence
MIFEQTRRISGVLWCFEHSGCTSRIRSSIWHIGWESRFHFFRPRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATP
CMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLGGGVTFRQVVWTT