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Spg008305 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008305
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold7:34571318..34574190
RNA-Seq ExpressionSpg008305
SyntenySpg008305
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-2958.04Show/hide
Query:  GSEINLSISGFLFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------
        G+ +NL     LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V  +        
Subjt:  GSEINLSISGFLFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------

Query:  ------TRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
                F+VS+GST IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  ------TRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.9e-3052.76Show/hide
Query:  GTMFCPGLGKAHAKPAIAGSEINLSISGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSS
        G+ F   + K +AKPAIA S  N      LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+
Subjt:  GTMFCPGLGKAHAKPAIAGSEINLSISGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSS

Query:  SSTWLELYIESVTFQTRF----SVSI-------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SSTWLELY ESV  +  F     V +       GS GIVRGDD+CWLHAVF AK AG PGG V
Subjt:  SSTWLELYIESVTFQTRF----SVSI-------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.7e-2659.35Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGDVWSVQ
        CWLHAVFRAK  GGPGG V +++
Subjt:  CWLHAVFRAKLAGGPGGDVWSVQ

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.2e-2663.56Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        F+VS+GSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGDV
        WLHAVFRAK  GGPGG V
Subjt:  WLHAVFRAKLAGGPGGDV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.7e-2659.35Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGDVWSVQ
        CWLHAVFRAK  GGPGG V +++
Subjt:  CWLHAVFRAKLAGGPGGDVWSVQ

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.1e-3058.04Show/hide
Query:  GSEINLSISGFLFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------
        G+ +NL     LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V  +        
Subjt:  GSEINLSISGFLFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------

Query:  ------TRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
                F+VS+GST IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  ------TRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7UAH6 CCHC-type domain-containing protein1.4e-3052.76Show/hide
Query:  GTMFCPGLGKAHAKPAIAGSEINLSISGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSS
        G+ F   + K +AKPAIA S  N      LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+
Subjt:  GTMFCPGLGKAHAKPAIAGSEINLSISGFLFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSS

Query:  SSTWLELYIESVTFQTRF----SVSI-------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SSTWLELY ESV  +  F     V +       GS GIVRGDD+CWLHAVF AK AG PGG V
Subjt:  SSTWLELYIESVTFQTRF----SVSI-------GSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7V9N3 Reverse transcriptase2.8e-2659.35Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGDVWSVQ
        CWLHAVFRAK  GGPGG V +++
Subjt:  CWLHAVFRAKLAGGPGGDVWSVQ

A0A5D3CJX3 CCHC-type domain-containing protein5.6e-2763.56Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        F+VS+GSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGDV
        WLHAVFRAK  GGPGG V
Subjt:  WLHAVFRAKLAGGPGGDV

A0A5D3DSY7 Putative Retrotransposon protein2.8e-2659.35Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFSVSIGSTGIVRGDDV

Query:  CWLHAVFRAKLAGGPGGDVWSVQ
        CWLHAVFRAK  GGPGG V +++
Subjt:  CWLHAVFRAKLAGGPGGDVWSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACAACGCATGATGCCACTTTAAGCCTTCAGAGGGTAATTCTCGTCTACTGCATCATGAAGGGAACCCCACTCGACCTGGGCCGCATCTTCGTCGACACATTGCG
CCAAACTGCAGCAAAACCAAAGGGCACAATGTTTTGTCCTGGCCTCGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAATCTCTGGTTTTT
TATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGAT
ACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAGCGTTTCAATAGGGTCAAC
AGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTTGGTCAGTTCAGATAGAACTAGCGGAGT
ATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCACAACGCATGATGCCACTTTAAGCCTTCAGAGGGTAATTCTCGTCTACTGCATCATGAAGGGAACCCCACTCGACCTGGGCCGCATCTTCGTCGACACATTGCG
CCAAACTGCAGCAAAACCAAAGGGCACAATGTTTTGTCCTGGCCTCGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAATCTCTGGTTTTT
TATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGAT
ACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAGCGTTTCAATAGGGTCAAC
AGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTTGGTCAGTTCAGATAGAACTAGCGGAGT
ATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MPTTHDATLSLQRVILVYCIMKGTPLDLGRIFVDTLRQTAAKPKGTMFCPGLGKAHAKPAIAGSEINLSISGFLFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPD
TLPTSAESSRSSSSTWLELYIESVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVWSVQIELAEYGLSIVESECSQD