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Spg008323 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008323
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:31726921..31730879
RNA-Seq ExpressionSpg008323
SyntenySpg008323
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2540268.1 hypothetical protein F2Q68_00029727 [Brassica cretica]3.4e-0738.58Show/hide
Query:  HVDAAWSKHNRNGGVGAVLRTKMGE--LVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVG
        HVDAAW  ++ N G+G +         L  +  SR PL SS L AEALAV   +   +  +I+++ + SDSLSL+S+L   E  PA  F +V DI     
Subjt:  HVDAAWSKHNRNGGVGAVLRTKMGE--LVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVG

Query:  SFEKINFCHINPRTRRHPSPSLSEISL
         F+ I+F HI PR     + SL++ +L
Subjt:  SFEKINFCHINPRTRRHPSPSLSEISL

KAF3601042.1 hypothetical protein F2Q69_00033707 [Brassica cretica]1.3e-0637.8Show/hide
Query:  HVDAAWSKHNRNGGVGAVLRTKMGE--LVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVG
        HVDAAW  ++ N G+G +         L  +  SR PL SS L AEALAV   +   +  +I+++ + SDSLSL+S+L   E  PA  F +V DI     
Subjt:  HVDAAWSKHNRNGGVGAVLRTKMGE--LVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVG

Query:  SFEKINFCHINPRTRRHPSPSLSEISL
         F+ I+F HI P      + SL++ +L
Subjt:  SFEKINFCHINPRTRRHPSPSLSEISL

KAG5392130.1 hypothetical protein IGI04_022093 [Brassica rapa subsp. trilocularis]7.5e-0733.08Show/hide
Query:  GEDFILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDIL
        G +   HVDAAW +     GVG + R      +  +       SS L AEALAV   + + +  +I+ +TV SDS  LIS+L   E  PA  + ++ DI 
Subjt:  GEDFILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDIL

Query:  CLVGSFEKINFCHINPRTRRHPSPSLSEISLHC
         L   F+ I+FC++ PR +   +  +++ +L C
Subjt:  CLVGSFEKINFCHINPRTRRHPSPSLSEISLHC

PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]2.2e-0630.77Show/hide
Query:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS
        L+ D A   +  N G+GAV+R ++GELV  +         P   EALA+ EGLR + L  IR + V  D+L +I+ L + E    +   V+  +  L+  
Subjt:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS

Query:  FEKINFCHINPRTRRHPSPSLSEISLHCYSRTARCRLKSPPLL
        FE +N+ H+  +  +  +  L+  +L    ++  CR + PP L
Subjt:  FEKINFCHINPRTRRHPSPSLSEISLHCYSRTARCRLKSPPLL

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]8.9e-0832.03Show/hide
Query:  FILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLV
        F ++ DAA +    + G+G V+R   G++++          SP+ AEALAVLEGLR+  L       + SD+L+++  + RNE   +D   V+ DIL   
Subjt:  FILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLV

Query:  GSFEKINFCHINPRTRRHPSPSLSEISL
          F   +F H+ PR     +  L++++L
Subjt:  GSFEKINFCHINPRTRRHPSPSLSEISL

TrEMBL top hitse value%identityAlignment
A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein1.1e-0630.77Show/hide
Query:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS
        L+ D A   +  N G+GAV+R ++GELV  +         P   EALA+ EGLR + L  IR + V  D+L +I+ L + E    +   V+  +  L+  
Subjt:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS

Query:  FEKINFCHINPRTRRHPSPSLSEISLHCYSRTARCRLKSPPLL
        FE +N+ H+  +  +  +  L+  +L    ++  CR + PP L
Subjt:  FEKINFCHINPRTRRHPSPSLSEISLHCYSRTARCRLKSPPLL

A0A397KY87 RNase H domain-containing protein3.1e-0634.88Show/hide
Query:  ILHVDAAWSKHNRNGGVGAVL--RTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCL
        + HVDAAW   +   GVG +         L  +   R  L SS L AEALAV   +   +  +I+++ + SDSL+LI+IL   E  PA  F +V DI   
Subjt:  ILHVDAAWSKHNRNGGVGAVL--RTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCL

Query:  VGSFEKINFCHINPRTRRHPSPSLSEISL
           F+ ++F H+ PR     + SL++++L
Subjt:  VGSFEKINFCHINPRTRRHPSPSLSEISL

A0A5C7GQX3 RNase H domain-containing protein4.3e-0832.03Show/hide
Query:  FILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLV
        F ++ DAA +    + G+G V+R   G++++          SP+ AEALAVLEGLR+  L       + SD+L+++  + RNE   +D   V+ DIL   
Subjt:  FILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLV

Query:  GSFEKINFCHINPRTRRHPSPSLSEISL
          F   +F H+ PR     +  L++++L
Subjt:  GSFEKINFCHINPRTRRHPSPSLSEISL

A0A6J1CNR4 uncharacterized protein LOC1110129504.0e-0633.94Show/hide
Query:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS
        ++VD A  KH     +G V R + G+++     R+     PL AE+LA+LEGLR+    +I++V   SDSL LI++L  +          + DI  L  +
Subjt:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS

Query:  FEKINFCHI
        F   NF H+
Subjt:  FEKINFCHI

A0A7H4L9Z4 Genome assembly, chromosome: II3.1e-0631.13Show/hide
Query:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS
        L+VDAA+     +G +GAV+R   G  +V  +  I     PL  EALA+  GL+++S     ++ V SDSL L+ I+ ++ +   +   ++ D   L   
Subjt:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS

Query:  FEKINFCHINPRTRRHPSPSLSEI--SLHCYSRTARCRLKSPPLLHKPASI
        F  I F  + PR     +  L+ +  S  C         K  PLLHK AS+
Subjt:  FEKINFCHINPRTRRHPSPSLSEI--SLHCYSRTARCRLKSPPLLHKPASI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0527.69Show/hide
Query:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS
        +  DAAW    ++ G G V+R       +   S       PL AEA+A+   L+      I K+++ SDS  LI+  + +E    + + ++ DIL L   
Subjt:  LHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGLRITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGS

Query:  FEKINFCHINPRTRRHPSPSLSEISLHCYS
        F  ++F  + PR+    +  L++ SL  +S
Subjt:  FEKINFCHINPRTRRHPSPSLSEISLHCYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGGCACACGAGGATTCATCTAATGCTCTTTTCATCTGTTCTAGAGCGTCAGATGTTTGGTCGACTCTGGGATATAGGGAGATCGAGGCTGAACTATCTGGAAC
GATCGGAATAGTGTGCTTCATTAGTGTCCAATACCTCTGGTGGAGGGGGGAAGATTTTATTTTGCATGTTGATGCCGCCTGGTCCAAACACAACAGGAACGGTGGAGTGG
GAGCAGTTCTCCGCACAAAGATGGGAGAATTGGTTGTCATTATGCATAGCAGGATTCCTTTACCATCATCTCCCTTATGTGCTGAGGCGTTAGCGGTTCTTGAAGGTCTT
AGAATAACTTCTCTAAGGCATATTCGTAAAGTAACGGTTTGCTCTGATTCCCTATCGTTGATATCCATCCTCCTTAGGAATGAACGGTGTCCAGCGGACTGTTTTCCTGT
TGTGACAGATATTCTGTGTCTCGTAGGATCTTTTGAAAAGATTAACTTTTGTCATATCAACCCACGAACCCGCCGTCACCCCTCTCCATCTCTCTCGGAAATCTCTCTTC
ACTGCTACTCACGAACTGCACGCTGTCGTCTGAAGTCGCCGCCACTACTGCACAAACCCGCCAGCATAAGACTAGCTGACACGTCACTTCTTCGTCTAGCACACGTGGGG
TTAGATTCCGGTGATTTCGACTTGAGGCAGGGTGTGGGAAGCGTTCAATCAACTCGAATCAGTGTACCCATTGAGATTAGAGCTCCAGTTGTCGAAATTTGGATCGAATT
AGAACCCGGACAGCAAGCTCAAGCAGGAGTTTGGTTTGGAGTCTATTCTTTTGATGGGAAGTGTTGTGGAGTGGGAGTAGAAATCTCTCATGATTGCCACTTGTGCATCT
CCAGTGAGTTGGTACGAGCAAGGACATACAAAGCGTGTGACGGATTGCTGCTGACGAGCCATGGAAAATATGTGATCATGACTTCTGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGGCACACGAGGATTCATCTAATGCTCTTTTCATCTGTTCTAGAGCGTCAGATGTTTGGTCGACTCTGGGATATAGGGAGATCGAGGCTGAACTATCTGGAAC
GATCGGAATAGTGTGCTTCATTAGTGTCCAATACCTCTGGTGGAGGGGGGAAGATTTTATTTTGCATGTTGATGCCGCCTGGTCCAAACACAACAGGAACGGTGGAGTGG
GAGCAGTTCTCCGCACAAAGATGGGAGAATTGGTTGTCATTATGCATAGCAGGATTCCTTTACCATCATCTCCCTTATGTGCTGAGGCGTTAGCGGTTCTTGAAGGTCTT
AGAATAACTTCTCTAAGGCATATTCGTAAAGTAACGGTTTGCTCTGATTCCCTATCGTTGATATCCATCCTCCTTAGGAATGAACGGTGTCCAGCGGACTGTTTTCCTGT
TGTGACAGATATTCTGTGTCTCGTAGGATCTTTTGAAAAGATTAACTTTTGTCATATCAACCCACGAACCCGCCGTCACCCCTCTCCATCTCTCTCGGAAATCTCTCTTC
ACTGCTACTCACGAACTGCACGCTGTCGTCTGAAGTCGCCGCCACTACTGCACAAACCCGCCAGCATAAGACTAGCTGACACGTCACTTCTTCGTCTAGCACACGTGGGG
TTAGATTCCGGTGATTTCGACTTGAGGCAGGGTGTGGGAAGCGTTCAATCAACTCGAATCAGTGTACCCATTGAGATTAGAGCTCCAGTTGTCGAAATTTGGATCGAATT
AGAACCCGGACAGCAAGCTCAAGCAGGAGTTTGGTTTGGAGTCTATTCTTTTGATGGGAAGTGTTGTGGAGTGGGAGTAGAAATCTCTCATGATTGCCACTTGTGCATCT
CCAGTGAGTTGGTACGAGCAAGGACATACAAAGCGTGTGACGGATTGCTGCTGACGAGCCATGGAAAATATGTGATCATGACTTCTGCGTAG
Protein sequenceShow/hide protein sequence
MLEAHEDSSNALFICSRASDVWSTLGYREIEAELSGTIGIVCFISVQYLWWRGEDFILHVDAAWSKHNRNGGVGAVLRTKMGELVVIMHSRIPLPSSPLCAEALAVLEGL
RITSLRHIRKVTVCSDSLSLISILLRNERCPADCFPVVTDILCLVGSFEKINFCHINPRTRRHPSPSLSEISLHCYSRTARCRLKSPPLLHKPASIRLADTSLLRLAHVG
LDSGDFDLRQGVGSVQSTRISVPIEIRAPVVEIWIELEPGQQAQAGVWFGVYSFDGKCCGVGVEISHDCHLCISSELVRARTYKACDGLLLTSHGKYVIMTSA