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Spg008332 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008332
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold10:31145432..31150064
RNA-Seq ExpressionSpg008332
SyntenySpg008332
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]7.1e-0837.31Show/hide
Query:  PSDS-QASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKM
        PSDS   +   WS PP G+ KLN D AW    G  G+GW + D  GC I AG             EA A+ E L      L++    +  ESDS + IKM
Subjt:  PSDS-QASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKM

Query:  LNKEDVDLTEVSNI---VASIEEMAQNFSSVYSP
        LNKEDV   E+  I   V  +   A +   +Y+P
Subjt:  LNKEDVDLTEVSNI---VASIEEMAQNFSSVYSP

CAB4273082.1 unnamed protein product [Prunus armeniaca]2.7e-0730.85Show/hide
Query:  EAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQA-SHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILE
        E F  ++  F  R  +  G    + L  P + QA +  SW  PP GV K+N DAAW       G+GW + D  G ++ AG K         ++EA AI E
Subjt:  EAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQA-SHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILE

Query:  GL-----KGLKKYLKIPPFPLMTESDSSAAIKMLNKE-DVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSRLSSV
         L      GL K        L  ESDS   I+M+  E ++D+  V  IV  I+++   F     +Y+P        + + F SR+  V
Subjt:  GL-----KGLKKYLKIPPFPLMTESDSSAAIKMLNKE-DVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSRLSSV

XP_015388431.1 uncharacterized protein LOC107178124 [Citrus sinensis]1.3e-0927.46Show/hide
Query:  PSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSS
        P+ + +   ++   +SW+PPP G +KLNVDAA   D   SG+G  I +  G ++ A     K    +  +EA A+  GL+ +     +P   L+ E+DS 
Subjt:  PSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSS

Query:  AAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPS-RLSSVINEEKCLVAYLIGDRERIPRMIVETDAKEVVKALNH
             +N     +TE+  +VA+I+ + +NF+ +   ++  SC+  A       L    N + CLV   +        M+VE+  +  +K L++
Subjt:  AAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPS-RLSSVINEEKCLVAYLIGDRERIPRMIVETDAKEVVKALNH

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.5e-1341.84Show/hide
Query:  WSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLT
        WS PP   WKLN DA+W E+    GIGW +CD  G ++ AG  K + + +I +LE   I+ GL+ +    +    P+  ESDS   I+++ KEDVDLT
Subjt:  WSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLT

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.8e-1227.89Show/hide
Query:  RNSIIAKDCEAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKS
        RN +I +   + +  +   + +++ E      + LS+   +  +   W PPP+ +W LN DA+W +     GIGW I  + G ++ AG +  +    +K 
Subjt:  RNSIIAKDCEAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKS

Query:  LEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPSRLSSVINE
        LEA AILEGL+ L     +   PL  E+DS+    +LN++  DLT+   +V  I  +  +   +    +G   +  A     R +SV+ E
Subjt:  LEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPSRLSSVINE

TrEMBL top hitse value%identityAlignment
A0A1S8AC01 Ribonuclease H-like superfamily protein2.6e-0829.58Show/hide
Query:  PSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSS
        P+P+ +   +  + + WSPP  G +KLNVDAA   D   SG+G  I +  G ++ A     K    +  +EA A+  GL+ +    K+P   L+ E+DS 
Subjt:  PSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSS

Query:  AAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESC
          +  +N +   + E+  +VA+I+ + +NF+ +   ++  SC
Subjt:  AAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESC

A0A4Y1R838 Ribonuclease H-like superfamily protein3.4e-0837.31Show/hide
Query:  PSDS-QASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKM
        PSDS   +   WS PP G+ KLN D AW    G  G+GW + D  GC I AG             EA A+ E L      L++    +  ESDS + IKM
Subjt:  PSDS-QASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKM

Query:  LNKEDVDLTEVSNI---VASIEEMAQNFSSVYSP
        LNKEDV   E+  I   V  +   A +   +Y+P
Subjt:  LNKEDVDLTEVSNI---VASIEEMAQNFSSVYSP

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-1227.89Show/hide
Query:  RNSIIAKDCEAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKS
        RN +I +   + +  +   + +++ E      + LS+   +  +   W PPP+ +W LN DA+W +     GIGW I  + G ++ AG +  +    +K 
Subjt:  RNSIIAKDCEAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKS

Query:  LEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPSRLSSVINE
        LEA AILEGL+ L     +   PL  E+DS+    +LN++  DLT+   +V  I  +  +   +    +G   +  A     R +SV+ E
Subjt:  LEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPSRLSSVINE

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.3e-0730.85Show/hide
Query:  EAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQA-SHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILE
        E F  ++  F  R  +  G    + L  P + QA +  SW  PP GV K+N DAAW       G+GW + D  G ++ AG K         ++EA AI E
Subjt:  EAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQA-SHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILE

Query:  GL-----KGLKKYLKIPPFPLMTESDSSAAIKMLNKE-DVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSRLSSV
         L      GL K        L  ESDS   I+M+  E ++D+  V  IV  I+++   F     +Y+P        + + F SR+  V
Subjt:  GL-----KGLKKYLKIPPFPLMTESDSSAAIKMLNKE-DVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSRLSSV

A0A6J5VSP2 Uncharacterized protein8.5e-0730.07Show/hide
Query:  PLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAA
        P  L   S  +  SW  PP G+ K+N DAAW       G+GW I D  G L+CAG +   H      +E  AI   L     +       ++ ESDS   
Subjt:  PLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAA

Query:  IKMLNKEDVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSR
        I MLN      +++  IV  I ++  + S    V++P+         +GF S+
Subjt:  IKMLNKEDVDLTEVSNIVASIEEMAQNFSS---VYSPNLGESCDFRASGFPSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)6.6e-0429.33Show/hide
Query:  PSDSQASH-ESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLK
        P+D  +   + WSPPP G  K N D+ + +   ++   W I D +G +I +G  K +  +     EA   L  L+
Subjt:  PSDSQASH-ESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFSGCLICAGRKKCKHQWQIKSLEAFAILEGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGTTATCCTCAGCCTACCAATTGGAAGTAATAACGCTAAAGATGAGATTATCTGGAATAGGGATCCTAAGGGGCTCTTCTCGAAACTCGATTATTGCAAAGGA
TTGTGAAGCTTTTTACCAGGAATTGAAGCCTTTTATCGTCCGCTACATCGAAGAAGATGGTGGTGCCTTCCCGAGCCCCCTTTCCTTGCCATCAGATAGCCAAGCGAGTC
ACGAAAGTTGGTCCCCTCCTCCGCTAGGGGTGTGGAAGTTGAATGTTGATGCTGCTTGGAGGGAAGATCTTGGTTTCAGCGGCATTGGTTGGTCAATTTGTGACTTTTCA
GGATGTTTGATTTGTGCAGGGAGGAAGAAATGTAAGCATCAGTGGCAAATCAAATCTCTTGAGGCTTTTGCAATTTTAGAAGGACTCAAAGGGTTAAAGAAGTATCTGAA
AATTCCTCCTTTCCCTTTGATGACAGAATCGGACTCTTCAGCTGCAATAAAGATGCTGAACAAAGAAGATGTTGATCTAACTGAAGTCTCAAACATTGTGGCGAGCATTG
AGGAAATGGCGCAAAATTTCTCTTCAGTTTATTCTCCTAATTTAGGAGAAAGTTGTGATTTTAGGGCTTCTGGCTTTCCCTCTCGGCTCTCCTCTGTTATAAATGAGGAG
AAGTGTTTGGTTGCATACTTGATTGGTGATAGAGAAAGGATTCCACGGATGATTGTTGAGACTGATGCAAAGGAGGTAGTCAAAGCCCTAAACCACGAATGCGAAGATTT
CTCAGAATCGAAGATGGTGTTGCAAGAGATCGAAAACCTAGCTTCGCAAGCTGGAATTATAGCGTTCAAAAAATGCCCTCGAGCAGGAAACAAGATCGCGAATCATCTTG
CGCGAGCAGCGACCAGATTTTGGTCGGATCTTCCCCTGTCTTCTGATGTCGACGAGAAGTCTTTTGTGCTAGGTCCTTCTTCCACGTCGGAAGACTTGTTTTTAGGATGG
GATGGTTGTAACAAACTCTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGTTATCCTCAGCCTACCAATTGGAAGTAATAACGCTAAAGATGAGATTATCTGGAATAGGGATCCTAAGGGGCTCTTCTCGAAACTCGATTATTGCAAAGGA
TTGTGAAGCTTTTTACCAGGAATTGAAGCCTTTTATCGTCCGCTACATCGAAGAAGATGGTGGTGCCTTCCCGAGCCCCCTTTCCTTGCCATCAGATAGCCAAGCGAGTC
ACGAAAGTTGGTCCCCTCCTCCGCTAGGGGTGTGGAAGTTGAATGTTGATGCTGCTTGGAGGGAAGATCTTGGTTTCAGCGGCATTGGTTGGTCAATTTGTGACTTTTCA
GGATGTTTGATTTGTGCAGGGAGGAAGAAATGTAAGCATCAGTGGCAAATCAAATCTCTTGAGGCTTTTGCAATTTTAGAAGGACTCAAAGGGTTAAAGAAGTATCTGAA
AATTCCTCCTTTCCCTTTGATGACAGAATCGGACTCTTCAGCTGCAATAAAGATGCTGAACAAAGAAGATGTTGATCTAACTGAAGTCTCAAACATTGTGGCGAGCATTG
AGGAAATGGCGCAAAATTTCTCTTCAGTTTATTCTCCTAATTTAGGAGAAAGTTGTGATTTTAGGGCTTCTGGCTTTCCCTCTCGGCTCTCCTCTGTTATAAATGAGGAG
AAGTGTTTGGTTGCATACTTGATTGGTGATAGAGAAAGGATTCCACGGATGATTGTTGAGACTGATGCAAAGGAGGTAGTCAAAGCCCTAAACCACGAATGCGAAGATTT
CTCAGAATCGAAGATGGTGTTGCAAGAGATCGAAAACCTAGCTTCGCAAGCTGGAATTATAGCGTTCAAAAAATGCCCTCGAGCAGGAAACAAGATCGCGAATCATCTTG
CGCGAGCAGCGACCAGATTTTGGTCGGATCTTCCCCTGTCTTCTGATGTCGACGAGAAGTCTTTTGTGCTAGGTCCTTCTTCCACGTCGGAAGACTTGTTTTTAGGATGG
GATGGTTGTAACAAACTCTGTTAG
Protein sequenceShow/hide protein sequence
MLKLSSAYQLEVITLKMRLSGIGILRGSSRNSIIAKDCEAFYQELKPFIVRYIEEDGGAFPSPLSLPSDSQASHESWSPPPLGVWKLNVDAAWREDLGFSGIGWSICDFS
GCLICAGRKKCKHQWQIKSLEAFAILEGLKGLKKYLKIPPFPLMTESDSSAAIKMLNKEDVDLTEVSNIVASIEEMAQNFSSVYSPNLGESCDFRASGFPSRLSSVINEE
KCLVAYLIGDRERIPRMIVETDAKEVVKALNHECEDFSESKMVLQEIENLASQAGIIAFKKCPRAGNKIANHLARAATRFWSDLPLSSDVDEKSFVLGPSSTSEDLFLGW
DGCNKLC