; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncoiled-coil domain-containing protein 1 isoform X3
Genome locationscaffold10:32772397..32772972
RNA-Seq ExpressionSpg008393
SyntenySpg008393
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]5.9e-7686.29Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFR K GSGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPSQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV-------EESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE D        EE +S+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV-------EESNSTDEDDDDRRKERRKKKA

KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-7788.14Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFR K GSGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSS+AAAA RNPRPSQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE D     EE NS+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA

XP_022141565.1 uncharacterized protein LOC111011897 [Momordica charantia]2.2e-7586.46Show/hide
Query:  MDFRKKT-GSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQ
        MDFRKK  GSGNDDEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS    +SD  S PPAIENL VDGESQ
Subjt:  MDFRKKT-GSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQ

Query:  SILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKAA
        SILGDDLA RFAALKASLPSST PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSD+DD+   +ES+S+DED DDRRKERRKKKAA
Subjt:  SILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKAA

XP_022939254.1 nucleolin [Cucurbita moschata]3.8e-7589.01Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFRK   SGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPSQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDE-GDVEESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE  D EE NS+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDE-GDVEESNSTDEDDDDRRKERRKKKA

XP_022993807.1 glucosidase 2 subunit beta [Cucurbita maxima]9.4e-7486.6Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFR K GSGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAA   RNPR SQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPS+EDDE D     EE NS+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA

TrEMBL top hitse value%identityAlignment
A0A1S4E6L5 uncharacterized protein LOC1035028663.1e-7083.94Show/hide
Query:  MDFRKKTGSGNDD--EQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSM-PPAIENLDVDGE
        MD RKKTG GNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S P +QSDSSS  PP IENL VDGE
Subjt:  MDFRKKTGSGNDD--EQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSM-PPAIENLDVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSSTTPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPS+EDDE   EE  S+DED +DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKA

A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X31.8e-7084.46Show/hide
Query:  MDFRKKTGSGNDD--EQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSM-PPAIENLDVDGE
        MD RKKTG GNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS AAA PRNPR S P +QSDSSS  PP IENL VDGE
Subjt:  MDFRKKTGSGNDD--EQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSM-PPAIENLDVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKA
        SQSILGDDLAARFAALKASLPSSTTPP SSIPNDVDS DEEDEVEKLIQWAKDAARLDPSPPS+EDDE   EE  S+DED +DR KERRKKKA
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKA

A0A6J1CIG2 uncharacterized protein LOC1110118971.1e-7586.46Show/hide
Query:  MDFRKKT-GSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQ
        MDFRKK  GSGNDDEQVEQLLQAAQDDLMLKL++DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPS    +SD  S PPAIENL VDGESQ
Subjt:  MDFRKKT-GSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQ

Query:  SILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKAA
        SILGDDLA RFAALKASLPSST PPPSS+PNDVDS+DEEDEVEKLIQWAKDAARLDPSPPSD+DD+   +ES+S+DED DDRRKERRKKKAA
Subjt:  SILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKAA

A0A6J1FGM0 nucleolin1.8e-7589.01Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFRK   SGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAA+ RNPRPSQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDE-GDVEESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPS+EDDE  D EE NS+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDE-GDVEESNSTDEDDDDRRKERRKKKA

A0A6J1JTW4 glucosidase 2 subunit beta4.6e-7486.6Show/hide
Query:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS
        MDFR K GSGN+DEQVEQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRPSSAAA   RNPR SQP  QSDSSS PP IENL VDGESQS
Subjt:  MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQS

Query:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA
        ILGDDLAARFAALKASLPSS TPPPSSIPNDVDSDDEEDEVEKLIQWAKDA RLDPSPPS+EDDE D     EE NS+DED DDR+KERRKKKA
Subjt:  ILGDDLAARFAALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDV----EESNSTDEDDDDRRKERRKKKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24370.1 unknown protein1.8e-2245.14Show/hide
Query:  GNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQSILGDDLAAR
        G ++++VEQLLQAAQD+++LKLS+DSH SR S +YLD DL  RF AL+S+            +  Q Q Q     M P  ++ DV  E+     +DL  R
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQSILGDDLAAR

Query:  FAALKASLPSSTTPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDD
        FAALK SLPS+++         I  D D   E+ EV+KLIQWA DAARLDPSP SD+      E+S + D DD++
Subjt:  FAALKASLPSSTTPP----PSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCAGAAAGAAGACGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGACGATCTCATGCTGAAATTGAGTATCGATTCACACAT
GTCGCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCGCCGCCGCCGCTCCCCGCAATCCTCGGCCTT
CTCAGCCGCAGCTTCAATCCGATTCGTCGTCTATGCCGCCGGCGATTGAAAATCTCGACGTTGATGGCGAATCTCAGTCGATTCTCGGTGACGATCTCGCTGCTAGATTC
GCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTACTCCGCCTCCGTCTTCGATACCTAACGATGTTGATAGCGACGACGAAGAGGATGAGGTTGAGAAGTTGATTCAGTG
GGCCAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCGTCTGATGAGGACGATGAAGGCGACGTCGAGGAGTCTAACAGTACCGATGAAGATGACGACGATCGGAGAAAGG
AGCGTCGGAAGAAGAAGGCGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCAGAAAGAAGACGGGAAGCGGCAACGACGACGAACAAGTGGAGCAATTGCTGCAAGCTGCTCAGGACGATCTCATGCTGAAATTGAGTATCGATTCACACAT
GTCGCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGATTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCGCCGCCGCCGCTCCCCGCAATCCTCGGCCTT
CTCAGCCGCAGCTTCAATCCGATTCGTCGTCTATGCCGCCGGCGATTGAAAATCTCGACGTTGATGGCGAATCTCAGTCGATTCTCGGTGACGATCTCGCTGCTAGATTC
GCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACTACTCCGCCTCCGTCTTCGATACCTAACGATGTTGATAGCGACGACGAAGAGGATGAGGTTGAGAAGTTGATTCAGTG
GGCCAAGGATGCCGCTCGTCTCGATCCTTCGCCTCCGTCTGATGAGGACGATGAAGGCGACGTCGAGGAGTCTAACAGTACCGATGAAGATGACGACGATCGGAGAAAGG
AGCGTCGGAAGAAGAAGGCGGCATGA
Protein sequenceShow/hide protein sequence
MDFRKKTGSGNDDEQVEQLLQAAQDDLMLKLSIDSHMSRVSPNYLDSDLDRRFQALRSRPSSAAAAAPRNPRPSQPQLQSDSSSMPPAIENLDVDGESQSILGDDLAARF
AALKASLPSSTTPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSDEDDEGDVEESNSTDEDDDDRRKERRKKKAA