CuGenDBv2

Gene ID	Spg008428
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L30-like
Genome location	scaffold10:34182056..34185647
RNA-Seq Expression	Spg008428
Synteny	Spg008428
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6602049.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-51

90.08

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLP
        FRVSCLSIIDPGDSDIIKSLP
Subjt:  FRVSCLSIIDPGDSDIIKSLP

XP_008460497.1 PREDICTED: 60S ribosomal protein L30-like [Cucumis melo]

1.7e-51

88.52

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAK+GVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

XP_022141723.1 60S ribosomal protein L30-like [Momordica charantia]

5.1e-51

89.34

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MA AKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

XP_022952815.1 60S ribosomal protein L30-like [Cucurbita moschata]

3.0e-51

90.08

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLP
        FRVSCLSIIDPGDSDIIKSLP
Subjt:  FRVSCLSIIDPGDSDIIKSLP

XP_022990953.1 60S ribosomal protein L30-like [Cucurbita maxima]

5.1e-51

89.26

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTV+RTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLP
        FRVSCLSIIDPGDSDIIKSLP
Subjt:  FRVSCLSIIDPGDSDIIKSLP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CCQ4 60S ribosomal protein L30-like

8.4e-52

88.52

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAK+GVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

A0A5D3DSZ7 60S ribosomal protein L30-like

8.4e-52

88.52

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAK+GVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

A0A6J1FH91 60S ribosomal protein L30-like

8.4e-52

88.52

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAK+GVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

A0A6J1GMT2 60S ribosomal protein L30-like

1.4e-51

90.08

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLP
        FRVSCLSIIDPGDSDIIKSLP
Subjt:  FRVSCLSIIDPGDSDIIKSLP

A0A6J1JWW8 60S ribosomal protein L30-like

8.4e-52

88.52

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKG            KLIILSNNCPPLRKSEIEYYAMLAK+GVHHYNGSNVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RVSCLSIIDPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

SwissProt top hits

e value

%identity

Alignment

O49884 60S ribosomal protein L30

4.5e-50

80.33

Show/hide

Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M  AKKTKKTHESINNRLALVMKSGKYTLGYKTVL+++RSSKG            KLII++NNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        +RV CLSI+DPGDSDIIK+LPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Q8VZ19 60S ribosomal protein L30-2

3.5e-47

75.41

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKG            KLI++S NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIKS+PG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Q9C8F7 Putative 60S ribosomal protein L30-1

1.2e-47

77.05

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKG            KLI++S+NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Q9LSA3 60S ribosomal protein L30-3

3.9e-46

74.59

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKG            KLI++S+NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIK+LPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Q9M5M6 60S ribosomal protein L30

4.2e-48

78.69

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M  AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL ++RS+KG            KLII++NNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRV CLSIID GDSDIIKS+PG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

8.6e-49

77.05

Show/hide

Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M  AKKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKG            KLI++S+NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIKSLPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.5e-48

75.41

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M   KKTKK+HE IN+RLALVMKSGKYTLGYK+VL+++R SKG            KLI++S NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIKS+PG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.8e-47

74.59

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Query:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY
        M   KK KK+HE IN+RLALVMKSGKYTLGYK+VL+++RSSKG            KLI++S+NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY
Subjt:  MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKY

Query:  FRVSCLSIIDPGDSDIIKSLPG
        FRVSCLSI+DPGDSDIIK+LPG
Subjt:  FRVSCLSIIDPGDSDIIKSLPG

Sequences

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CDS sequence

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ATGGCGCCGGCGAAGAAGACTAAGAAGACTCATGAGAGCATTAACAACAGGCTCGCCCTCGTGATGAAGAGCGGCAAGTACACGCTGGGGTACAAAACCGTCCTTCGCAC
TATCCGCAGTTCCAAAGGTCTTCATTCGTCGTTCTCCCTTTCCGAGAAATCTTGGAAGCTTATTATTCTATCTAACAACTGCCCGCCTCTGCGTAAATCCGAAATCGAGT
ACTACGCAATGCTTGCTAAAGTTGGGGTTCATCACTACAACGGAAGCAATGTTGATCTTGGAACTGCTTGTGGCAAGTATTTCCGCGTCTCCTGCCTCAGCATTATCGAC
CCAGGTGACTCTGATATTATCAAATCGCTTCCTGGGGCTTCGTCGTCTGTTCGCCATTCGTTCGTTCGTGGGGAGAAGGCACTTCCGCTCGCGATTTCATCGCTCGAAAT
AAATGACAGCTTGCAACTTCGCCACTCGAAGGAGGTGAGACCGAAAGACTACGAATGGGCGGCGAACGGACTACGAACGGCGGCGAACTTCAGTCTGAACATGCGCGCGA
ACACGGTTTGCAGAGAGAGTGAAGTGAGATGA

mRNA sequence

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Protein sequence

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MAPAKKTKKTHESINNRLALVMKSGKYTLGYKTVLRTIRSSKGLHSSFSLSEKSWKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYFRVSCLSIID
PGDSDIIKSLPGASSSVRHSFVRGEKALPLAISSLEINDSLQLRHSKEVRPKDYEWAANGLRTAANFSLNMRANTVCRESEVR

Spg008428 (gene) of Sponge gourd (cylindrica) v1 genome