; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008457 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008457
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:31810923..31812491
RNA-Seq ExpressionSpg008457
SyntenySpg008457
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8773910.1 hypothetical protein D1007_53770 [Hordeum vulgare]3.9e-1335.48Show/hide
Query:  MGDLELIATTCWAIWMDRNKFTHNEEI--PPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWS--SLPPSTGIR
        +G  ELIAT  W +W +R + T+ E++  PPR+     I    + +  A  KK   +              W PP +   KLNVDA ++  S+  S+G+ 
Subjt:  MGDLELIATTCWAIWMDRNKFTHNEEI--PPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWS--SLPPSTGIR

Query:  CVLRDDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK
         VLRD+KG    A  S + F  D   AE R + +G+ LA  +G  K++VESDCMK
Subjt:  CVLRDDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK

XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]3.5e-1434.69Show/hide
Query:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD
        + EL+   CWAIW  RNK     +     +        LE YQ    +K   +   +      +  RW PPP+N LKLNVDAA +S     G+  VLRD 
Subjt:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD

Query:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDC
         GRV  A      F  D + AE  AI  G+++A       ++VE+DC
Subjt:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDC

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]8.3e-1636Show/hide
Query:  ELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNP---VRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRD
        +L A T WAIW DRN   H   +    +R  WI  Y + Y  A   K      R+  + +S P    RW PP  + +K+N DAA  S   STG+  ++RD
Subjt:  ELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNP---VRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRD

Query:  DKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK
          G +  A +  L   L+   AE+R ILE ++LA S  + +++VESDC +
Subjt:  DKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.1e-1532.34Show/hide
Query:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPV--RWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLR
        DL L A T W IW DRN   H +++ P   + +W+  +L+ +  A            +T+ N  PV   W P  S  LKLN DAA      ST   C++R
Subjt:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPV--RWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLR

Query:  DDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD-CMKCNMVDDEIAKRAKKE
        D    +  A++  + F L   +AE+R ILEG++ A +  F  + VESD  +   ++ +EI  R  ++
Subjt:  DDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD-CMKCNMVDDEIAKRAKKE

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]8.6e-1331.72Show/hide
Query:  LIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDDKGR
        L+ T  WA W +RN+  H  E        +W+  YL +Y  A  + V A+   +        V W+PPP + LK+NVD A +      G+  V+RD++GR
Subjt:  LIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDDKGR

Query:  VRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCM
        V  A +  +   L     E++A   G++LA  MG+  I++E D +
Subjt:  VRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCM

TrEMBL top hitse value%identityAlignment
A0A0E0CHR8 Uncharacterized protein7.9e-1232.68Show/hide
Query:  MGDLELIATTCWAIWMDRNKFTHNEEI--PPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCV
        +G  ++I T CW IW  R +  H EEI  PPR+                N+K V     +  T++N    RW  PP   L +NVDA +     +     V
Subjt:  MGDLELIATTCWAIWMDRNKFTHNEEI--PPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCV

Query:  LRDDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK
        +RD  G    AS S++   +D TMAE  A+ +G+ LA  +G  ++  +SDCM+
Subjt:  LRDDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK

A0A6J1BQ49 uncharacterized protein LOC1110047864.0e-1636Show/hide
Query:  ELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNP---VRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRD
        +L A T WAIW DRN   H   +    +R  WI  Y + Y  A   K      R+  + +S P    RW PP  + +K+N DAA  S   STG+  ++RD
Subjt:  ELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNP---VRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRD

Query:  DKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK
          G +  A +  L   L+   AE+R ILE ++LA S  + +++VESDC +
Subjt:  DKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMK

A0A6J1DX30 uncharacterized protein LOC1110248742.0e-1532.34Show/hide
Query:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPV--RWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLR
        DL L A T W IW DRN   H +++ P   + +W+  +L+ +  A            +T+ N  PV   W P  S  LKLN DAA      ST   C++R
Subjt:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPV--RWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLR

Query:  DDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD-CMKCNMVDDEIAKRAKKE
        D    +  A++  + F L   +AE+R ILEG++ A +  F  + VESD  +   ++ +EI  R  ++
Subjt:  DDKGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD-CMKCNMVDDEIAKRAKKE

A0A6J1DZK3 uncharacterized protein LOC1110249684.6e-1230.06Show/hide
Query:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLE----KYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCV
        +L L   TCWA+W DR+   + ++IP   I+ +WI  Y E    KY N   +++  ++             W PP    +K+N DAA S     +G+  +
Subjt:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLE----KYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCV

Query:  LRDDKGRVRGASASHLDFDLDGT--MAELRAILEGIRLAISMGFGKILVESDCMKC-NMVDDE
        LR+    + GA    +DF +  T  +A++ AI EG+ LA  +G  +++VE+D ++  N++ D+
Subjt:  LRDDKGRVRGASASHLDFDLDGT--MAELRAILEGIRLAISMGFGKILVESDCMKC-NMVDDE

A0A7N2R0C3 Reverse transcriptase domain-containing protein6.0e-1229.73Show/hide
Query:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD
        D E   TT W IW +RN            +  K     +E++++ N K+   ++ R+Q         W PP   + K NVD A      S GI  V+R+D
Subjt:  DLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD

Query:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCM
        +G++ GA +  L+  L     E +A  EG+RLA  +G  ++++E D +
Subjt:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0726.9Show/hide
Query:  LIATTCWAIWMDRNK--FTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDDK
        L+    W +W  RN+  F   E   P  +R + + D+ E++      + +A   +++  L+   V+W  PP  ++K N DA W    P  GI  +LR++ 
Subjt:  LIATTCWAIWMDRNK--FTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDDK

Query:  GRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD
        G V    A  L    +   AEL A+   +       + +I+ ESD
Subjt:  GRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD

AT4G29090.1 Ribonuclease H-like superfamily protein8.9e-0827.4Show/hide
Query:  ELIATTCWAIWMDRNKFT-HNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLN-SNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD
        +L+    W +W +RN+      E   + +  +   D LE+++     + EA     + ++N S+  RW PPP  ++K N DA W+      GI  VLR++
Subjt:  ELIATTCWAIWMDRNKFT-HNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLN-SNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDD

Query:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD
        KG V+   A  L        AEL A+   +       +  ++ ESD
Subjt:  KGRVRGASASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACCTAGAATTGATAGCTACTACATGTTGGGCGATATGGATGGATAGGAACAAATTCACTCACAACGAAGAAATTCCCCCACGTAATATAAGGGGCAAATGGAT
AAGGGACTACCTGGAAAAGTATCAGAATGCAAACTGGAAGAAGGTCGAAGCAATTGATAGAAGGTTGCAAACAAAGCTGAACTCAAATCCTGTCCGGTGGCATCCGCCGC
CAAGTAATTTCTTAAAATTGAATGTAGATGCAGCGTGGAGCTCTTTACCCCCATCAACAGGAATCAGATGTGTATTAAGGGATGATAAGGGTCGTGTGAGGGGAGCATCT
GCTTCTCACCTGGATTTTGACCTGGATGGAACAATGGCGGAGTTGAGAGCGATCCTCGAAGGAATTCGCTTGGCGATTTCTATGGGGTTTGGCAAAATTTTGGTGGAGTC
AGATTGCATGAAATGTAATATGGTAGATGATGAGATAGCTAAAAGAGCAAAAAAGGAAGGTCTAAACAAGGTAATTTTAGACCACACTGACGAACAAGGAGCTGACGAGG
ACAATCGGGCAAAGGCCGAGCTCGGTCACCTCCTTTTGGCCCCTGATGCCCCGGATCGCCCCAGCTCCGCCTGGTTCGTCCCAAAACACCTCCGAATTCCTGAAAACCCT
AGGAGGAAAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGCT
GGTGTCACGTGAAGGTCAGGTGAGTCTTCTGGCCGGATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGTGGTGGTC
TGCAGGAACCAGAAAGAAACCTCGGGTATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACCTAGAATTGATAGCTACTACATGTTGGGCGATATGGATGGATAGGAACAAATTCACTCACAACGAAGAAATTCCCCCACGTAATATAAGGGGCAAATGGAT
AAGGGACTACCTGGAAAAGTATCAGAATGCAAACTGGAAGAAGGTCGAAGCAATTGATAGAAGGTTGCAAACAAAGCTGAACTCAAATCCTGTCCGGTGGCATCCGCCGC
CAAGTAATTTCTTAAAATTGAATGTAGATGCAGCGTGGAGCTCTTTACCCCCATCAACAGGAATCAGATGTGTATTAAGGGATGATAAGGGTCGTGTGAGGGGAGCATCT
GCTTCTCACCTGGATTTTGACCTGGATGGAACAATGGCGGAGTTGAGAGCGATCCTCGAAGGAATTCGCTTGGCGATTTCTATGGGGTTTGGCAAAATTTTGGTGGAGTC
AGATTGCATGAAATGTAATATGGTAGATGATGAGATAGCTAAAAGAGCAAAAAAGGAAGGTCTAAACAAGGTAATTTTAGACCACACTGACGAACAAGGAGCTGACGAGG
ACAATCGGGCAAAGGCCGAGCTCGGTCACCTCCTTTTGGCCCCTGATGCCCCGGATCGCCCCAGCTCCGCCTGGTTCGTCCCAAAACACCTCCGAATTCCTGAAAACCCT
AGGAGGAAAAACAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGCT
GGTGTCACGTGAAGGTCAGGTGAGTCTTCTGGCCGGATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGTGGTGGTC
TGCAGGAACCAGAAAGAAACCTCGGGTATGAGTAG
Protein sequenceShow/hide protein sequence
MGDLELIATTCWAIWMDRNKFTHNEEIPPRNIRGKWIRDYLEKYQNANWKKVEAIDRRLQTKLNSNPVRWHPPPSNFLKLNVDAAWSSLPPSTGIRCVLRDDKGRVRGAS
ASHLDFDLDGTMAELRAILEGIRLAISMGFGKILVESDCMKCNMVDDEIAKRAKKEGLNKVILDHTDEQGADEDNRAKAELGHLLLAPDAPDRPSSAWFVPKHLRIPENP
RRKNRHRRRCGLHHAGVQRFLLVLQVTSSPASTNSLLVSREGQVSLLAGFWHQQLAPSVGKSACQFRPRIGGGLQEPERNLGYE