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Spg008470 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008470
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease
Genome locationscaffold10:35745736..35749544
RNA-Seq ExpressionSpg008470
SyntenySpg008470
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0031047 - gene silencing by RNA (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0016442 - RISC complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7833594.1 ribonuclease TUDOR 1-like [Senna tora]6.8e-0762.26Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRKFVSLELRDIVGQPIEQI
        KVRE+ QQKGEVSPYL ELLRLE QAKQ+GLGRW K        I   P+  I
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRKFVSLELRDIVGQPIEQI
XP_004138013.1 ribonuclease TUDOR 1 [Cucumis sativus]8.8e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
XP_008464356.1 PREDICTED: staphylococcal nuclease domain-containing protein 1 [Cucumis melo]8.8e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
XP_022135072.1 ribonuclease TUDOR 1-like [Momordica charantia]8.8e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
XP_038878676.1 ribonuclease TUDOR 1-like [Benincasa hispida]8.8e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
TrEMBL top hitse value%identityAlignment
A0A0A0LRJ8 Ribonuclease4.3e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
A0A1S3CL97 Ribonuclease4.3e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
A0A5D3BH85 Ribonuclease4.3e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
A0A6J1C3S6 Ribonuclease4.3e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
E5GBL0 Ribonuclease4.3e-0786.11Show/hide
Query:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE+ QQKGEVSPYL ELLRLE+QAKQQGLGRW K
Subjt:  KVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G07350.1 TUDOR-SN protein 11.5e-0462.16Show/hide
Query:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE  QQ + +VSPY+ ELL+LE  AKQ+G GRW K
Subjt:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK
AT5G07350.2 TUDOR-SN protein 11.5e-0462.16Show/hide
Query:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK
        KVRE  QQ + +VSPY+ ELL+LE  AKQ+G GRW K
Subjt:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK
AT5G61780.1 TUDOR-SN protein 27.5e-0456.76Show/hide
Query:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK
        KVR   QQ + +VSPY+ EL +LE QA+Q+G GRW K
Subjt:  KVRERSQQ-KGEVSPYLVELLRLENQAKQQGLGRWRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTCATCCTAATTAAGCAGCGCCGATCGAAGTCTTGTCTCGCCGTGGAAGCAGCAGCGCCGAAGTCGAGTCTCACGCCGTGGAAGCAGCAGCGCCGAAAGTTCAT
CTCGTCACGCCGTGGAAGCAGCAACAGCGCCGTGGAGTCTCGCTGTCCGTTTTCCCTCTCTTCCTCGAGCAAATCGCCACCAAAGGTAAGGGAGCGAAGTCAGCAGAAGG
GTGAAGTGAGTCCTTACCTTGTAGAACTACTACGTCTTGAAAACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGAAAGTTTGTTTCCTTAGAACTCAGGGACATAGTA
GGACAACCTATAGAACAAATTCTGGTCAATTGGTTAGGAGCTTGGAAGCTAAAGAGTGTATTCGTTTTGCCAAGCAACTTAATAGCTAAAGACGAAATGGTGGCATTAAA
AACTGCTTCATCACAAGACGGCGGTGAAACTCTTCAGGACAAAGAGATATGTGAACAAGTACTAGGCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTCATCCTAATTAAGCAGCGCCGATCGAAGTCTTGTCTCGCCGTGGAAGCAGCAGCGCCGAAGTCGAGTCTCACGCCGTGGAAGCAGCAGCGCCGAAAGTTCAT
CTCGTCACGCCGTGGAAGCAGCAACAGCGCCGTGGAGTCTCGCTGTCCGTTTTCCCTCTCTTCCTCGAGCAAATCGCCACCAAAGGTAAGGGAGCGAAGTCAGCAGAAGG
GTGAAGTGAGTCCTTACCTTGTAGAACTACTACGTCTTGAAAACCAAGCAAAGCAACAAGGTCTTGGGCGTTGGAGAAAGTTTGTTTCCTTAGAACTCAGGGACATAGTA
GGACAACCTATAGAACAAATTCTGGTCAATTGGTTAGGAGCTTGGAAGCTAAAGAGTGTATTCGTTTTGCCAAGCAACTTAATAGCTAAAGACGAAATGGTGGCATTAAA
AACTGCTTCATCACAAGACGGCGGTGAAACTCTTCAGGACAAAGAGATATGTGAACAAGTACTAGGCATGTGA
Protein sequenceShow/hide protein sequence
MPFILIKQRRSKSCLAVEAAAPKSSLTPWKQQRRKFISSRRGSSNSAVESRCPFSLSSSSKSPPKVRERSQQKGEVSPYLVELLRLENQAKQQGLGRWRKFVSLELRDIV
GQPIEQILVNWLGAWKLKSVFVLPSNLIAKDEMVALKTASSQDGGETLQDKEICEQVLGM