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Spg008480 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008480
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold10:29712864..29716435
RNA-Seq ExpressionSpg008480
SyntenySpg008480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054153.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-1845.97Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++   +E +DEGWT+VTRRKK+K   +Q++P  ++NYRR N +QK K+  K +RK KLV EE++DF  ++  VTL DFFP  FL D  ++ P +VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEEGDSSSSPSQNAKKESIKE
        +NT EE    S P ++ ++E + +
Subjt:  VNTLEEGDSSSSPSQNAKKESIKE

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-1845.16Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++  S+E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K ++K KL+ EE++DF  ++  VTL +FFP  FL D  ++ PE+VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEEGDSSSSPSQNAKKESIKE
        ++ +EE    S P ++ ++E + +
Subjt:  VNTLEEGDSSSSPSQNAKKESIKE

KAA0059012.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-1751.89Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++  S+E +DEGW +VTRRKK+K  S Q+E   +RNYRR N +QK K+  K +RKPKLV EE++D    +  VTL DFFP  FL D  ++ P  VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEE
        ++T EE
Subjt:  VNTLEE

KAA0064171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-1943.71Show/hide
Query:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE
        ++LR+  EK  DQ++   R           + A +  Q++   +E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K +RK KLV EE
Subjt:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE

Query:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS
        ++DF  ++  VTL DFFP  FL D   + P +VACHA+N  EE  S +S S
Subjt:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS

TYK02858.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.4e-1943.71Show/hide
Query:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE
        ++LR+  EK  DQ++   R           + A +  Q++   +E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K +RK KLV EE
Subjt:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE

Query:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS
        ++DF  ++  VTL DFFP  FL D   + P +VACHA+N  EE  S +S S
Subjt:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS

TrEMBL top hitse value%identityAlignment
A0A5A7SZ85 Ty3-gypsy retrotransposon protein1.5e-1745.16Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++   +E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K +RK K + EE++DF  ++  VTL DFFP  FL D  ++ P +VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEEGDSSSSPSQNAKKESIKE
        +N  EE    S P ++ ++E + +
Subjt:  VNTLEEGDSSSSPSQNAKKESIKE

A0A5A7UDR5 Ty3-gypsy retrotransposon protein1.3e-1845.97Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++   +E +DEGWT+VTRRKK+K   +Q++P  ++NYRR N +QK K+  K +RK KLV EE++DF  ++  VTL DFFP  FL D  ++ P +VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEEGDSSSSPSQNAKKESIKE
        +NT EE    S P ++ ++E + +
Subjt:  VNTLEEGDSSSSPSQNAKKESIKE

A0A5A7VEL0 Ty3-gypsy retrotransposon protein4.5e-1943.71Show/hide
Query:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE
        ++LR+  EK  DQ++   R           + A +  Q++   +E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K +RK KLV EE
Subjt:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE

Query:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS
        ++DF  ++  VTL DFFP  FL D   + P +VACHA+N  EE  S +S S
Subjt:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.7e-1845.16Show/hide
Query:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA
        Q++  S+E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K ++K KL+ EE++DF  ++  VTL +FFP  FL D  ++ PE+VACHA
Subjt:  QDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHA

Query:  VNTLEEGDSSSSPSQNAKKESIKE
        ++ +EE    S P ++ ++E + +
Subjt:  VNTLEEGDSSSSPSQNAKKESIKE

A0A5D3BV50 Ty3-gypsy retrotransposon protein4.5e-1943.71Show/hide
Query:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE
        ++LR+  EK  DQ++   R           + A +  Q++   +E +DEGWT+VTRRKK+K   +Q+EP  +RNYRR N +QK K+  K +RK KLV EE
Subjt:  MLLRMVEEK--DQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEGWTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEE

Query:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS
        ++DF  ++  VTL DFFP  FL D   + P +VACHA+N  EE  S +S S
Subjt:  NQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCTGCTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAACGAAACATCCAGTCC
TGATGTGATGTCTGTGATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAGGATGGTCGAAGAGAAAGACCAAG
AAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGAATGTTGCTGAATCGAAATCTGCAAGAGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGA
TGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTCCGTTCAAAGAGAGCCTCACATGTTCCGTAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAA
TTTCAAAGGTTCAAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGTCTCGACATCCGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATG
ACGATCACGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACACTTGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCAAA
GAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCGAAAGTTCCAAAGGAAGAGGCATCGTCAAACGTCCCTATATTGCGCTATGTTCC
TTTGTCTCGACGTAAGAAAGGGGAATCACCATTCACAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCTGCTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAACGAAACATCCAGTCC
TGATGTGATGTCTGTGATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAGGATGGTCGAAGAGAAAGACCAAG
AAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGAATGTTGCTGAATCGAAATCTGCAAGAGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGA
TGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTCCGTTCAAAGAGAGCCTCACATGTTCCGTAACTACAGAAGAAAGAACATGTCACAAAAGCAGAAGAGAAA
TTTCAAAGGTTCAAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTGTCTCGACATCCGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATG
ACGATCACGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACACTTGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCAAA
GAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCGAAAGTTCCAAAGGAAGAGGCATCGTCAAACGTCCCTATATTGCGCTATGTTCC
TTTGTCTCGACGTAAGAAAGGGGAATCACCATTCACAGAATAA
Protein sequenceShow/hide protein sequence
MLRRMTESAQLEIAAAENLMLGKFISSSQQPNETSSPDVMSVMMTDAGTSEERMAEVEKKISMLLRMVEEKDQEIASLRNQMESRNVAESKSARDIFQDQLESVENEDEG
WTLVTRRKKQKKHSVQREPHMFRNYRRKNMSQKQKRNFKGSRKPKLVVEENQDFVLSRHPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTLEEGDSSSSPSQNAKKESIK
EVDACEVQSKEASAHPAKSKVPKEEASSNVPILRYVPLSRRKKGESPFTE