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Spg008499 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008499
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionubiquitin carboxyl-terminal hydrolase 12-like
Genome locationscaffold10:32111781..32113312
RNA-Seq ExpressionSpg008499
SyntenySpg008499
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002083 - MATH/TRAF domain
IPR008974 - TRAF-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146379.1 ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia]5.8e-1532.3Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGG--------------------------------------------------KEKC---
        +RS+R EKPLHYTL+IQSFSLLK AL  S  DRYES+IFNAGG                                                  K+K    
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGG--------------------------------------------------KEKC---

Query:  ------------------RIISL---------------CI--------------WRIRVRP------ESDYLSLILVFDGFKEVSQGFQ--VEFELAVLS
                          ++ISL               C               W++ + P      E+ +LSL L+ D  KE+ QG +  VE+ELA+LS
Subjt:  ------------------RIISL---------------CI--------------WRIRVRP------ESDYLSLILVFDGFKEVSQGFQ--VEFELAVLS

Query:  QLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNE--SGFLHDDTMMVESKINVISTLKN
        QLG E  + +  +WF        ++SLS L +   G+LH+DT+ VE KINVIST K+
Subjt:  QLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNE--SGFLHDDTMMVESKINVISTLKN

XP_022146380.1 probable inactive serine/threonine-protein kinase fnkC [Momordica charantia]1.0e-1137.85Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILV--FDGFKEVSQGFQVEFELAVL
        +RS+R EKPLHYTL+IQSFSLLKAALA S RDRYESQIFNAGG +         W++ V P        +D++SL LV   D     S G    F     
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILV--FDGFKEVSQGFQVEFELAVL

Query:  SQLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKT
                    +W F+        +SL   N+S  GF+  D          M  + K  V+S +K    HK   KT
Subjt:  SQLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKT

XP_022146381.1 ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia]8.7e-1134.1Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQVEFELAVLSQ
        L  +R EKPLHYTL+IQSFSLLK ALA S  DRYESQIFNAGG +         W++ V P        SD++SL LV       +    V F   V   
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQVEFELAVLSQ

Query:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTNESILANLWSIINL
        L D        + RRF    T+W F+        +SL   N+S  GFL  D             + K  V+S +K        PK NE      W   N 
Subjt:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTNESILANLWSIINL

Query:  DRVRKSRHSLEVSDQDG
         ++ K+ +  +    +G
Subjt:  DRVRKSRHSLEVSDQDG

XP_022146383.1 uncharacterized protein LOC111015611 [Momordica charantia]2.1e-0941.41Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVL--
        LRS R EKPLHYTLKI+SFSLLK ALA SKRDR+ SQIF+A G +         W++ + P  D       Y+SL LV    + VS   +V   L  L  
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVL--

Query:  -----SQLGDED------RRFSTKWWFD
               L  +D       R  T+W F+
Subjt:  -----SQLGDED------RRFSTKWWFD

XP_038874970.1 uncharacterized protein LOC120067490 [Benincasa hispida]1.1e-1339.35Show/hide
Query:  KPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD------YLSLILVFDGFKEVSQGFQ--VEFELAVLSQLGDEDR
        K   YT KI +FS L        ++ YES  F          +    W+I + P  D      Y+S+ L FD F+++ QG +  VE+++AVLSQLG    
Subjt:  KPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD------YLSLILVFDGFKEVSQGFQ--VEFELAVLSQLGDEDR

Query:  RFSTKWWFDHKSKDKG---YLSLSNLNE--SGFLHDDTMMVESKINVISTLKNCF
         +  K WFD ++K  G   ++SLSN+ E   GFL DDT+MVE KINVIS LK+ +
Subjt:  RFSTKWWFDHKSKDKG---YLSLSNLNE--SGFLHDDTMMVESKINVISTLKNCF

TrEMBL top hitse value%identityAlignment
A0A6J1CX47 probable inactive serine/threonine-protein kinase fnkC5.0e-1237.85Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILV--FDGFKEVSQGFQVEFELAVL
        +RS+R EKPLHYTL+IQSFSLLKAALA S RDRYESQIFNAGG +         W++ V P        +D++SL LV   D     S G    F     
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILV--FDGFKEVSQGFQVEFELAVL

Query:  SQLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKT
                    +W F+        +SL   N+S  GF+  D          M  + K  V+S +K    HK   KT
Subjt:  SQLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKT

A0A6J1CXZ0 ubiquitin carboxyl-terminal hydrolase 12-like2.8e-1532.3Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGG--------------------------------------------------KEKC---
        +RS+R EKPLHYTL+IQSFSLLK AL  S  DRYES+IFNAGG                                                  K+K    
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGG--------------------------------------------------KEKC---

Query:  ------------------RIISL---------------CI--------------WRIRVRP------ESDYLSLILVFDGFKEVSQGFQ--VEFELAVLS
                          ++ISL               C               W++ + P      E+ +LSL L+ D  KE+ QG +  VE+ELA+LS
Subjt:  ------------------RIISL---------------CI--------------WRIRVRP------ESDYLSLILVFDGFKEVSQGFQ--VEFELAVLS

Query:  QLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNE--SGFLHDDTMMVESKINVISTLKN
        QLG E  + +  +WF        ++SLS L +   G+LH+DT+ VE KINVIST K+
Subjt:  QLGDEDRRFSTKWWFDHKSKDKGYLSLSNLNE--SGFLHDDTMMVESKINVISTLKN

A0A6J1CYF6 uncharacterized protein LOC1110156111.0e-0941.41Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVL--
        LRS R EKPLHYTLKI+SFSLLK ALA SKRDR+ SQIF+A G +         W++ + P  D       Y+SL LV    + VS   +V   L  L  
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVL--

Query:  -----SQLGDED------RRFSTKWWFD
               L  +D       R  T+W F+
Subjt:  -----SQLGDED------RRFSTKWWFD

A0A6J1CZ69 ubiquitin carboxyl-terminal hydrolase 13-like4.2e-1134.1Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQVEFELAVLSQ
        L  +R EKPLHYTL+IQSFSLLK ALA S  DRYESQIFNAGG +         W++ V P        SD++SL LV       +    V F   V   
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQVEFELAVLSQ

Query:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTNESILANLWSIINL
        L D        + RRF    T+W F+        +SL   N+S  GFL  D             + K  V+S +K        PK NE      W   N 
Subjt:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTNESILANLWSIINL

Query:  DRVRKSRHSLEVSDQDG
         ++ K+ +  +    +G
Subjt:  DRVRKSRHSLEVSDQDG

A0A6J1CZF7 uncharacterized protein LOC1110156101.4e-0935.83Show/hide
Query:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVLSQ
        LRS R EKPLHYTL+IQ FSLLK ALA S RDRYES IF+  G +         W++ V P  D       ++SL LV       +    V F + V   
Subjt:  LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESD-------YLSLILVFDGFKEVSQGFQVEFELAVLSQ

Query:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTN
        L D        + RRF     +W F+        +SL   N+S  GFL DD          M  + K   +S +K    +K   KTN
Subjt:  LGD--------EDRRF---STKWWFDHKSKDKGYLSLSNLNES--GFLHDD---------TMMVESKINVISTLKNCFVHKSIPKTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G17380.1 TRAF-like family protein3.4e-0530.07Show/hide
Query:  PLHYTLKIQSFSLL-KAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQV--EFELAVLSQ-----
        P HY +KI+SFSLL K A+     +RYE++ F AGG +         W++ + P         D++S+ L       +S G++V   F L +L Q     
Subjt:  PLHYTLKIQSFSLL-KAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPE-------SDYLSLILVFDGFKEVSQGFQV--EFELAVLSQ-----

Query:  --LGDEDRRFST---KWWFDHKSKDKGYLSLSNLNESGFLHDDTMMVESKINV
          L   +RRF +   +W FD       +   SN    G+L +DT M  + + V
Subjt:  --LGDEDRRFST---KWWFDHKSKDKGYLSLSNLNESGFLHDDTMMVESKINV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAGATCCTCAAGAGTTGAAAAACCTCTGCATTATACCTTAAAGATCCAATCTTTTTCGTTGCTTAAGGCTGCACTTGCTGGTTCCAAGCGTGACAGATATGAATCCCA
GATCTTCAATGCAGGAGGAAAAGAAAAGTGTCGGATCATATCTCTGTGTATTTGGAGAATACGGGTTCGTCCTGAAAGTGACTATTTGTCCTTGATCTTGGTATTTGATG
GTTTCAAGGAGGTTTCCCAAGGTTTTCAAGTTGAATTTGAGTTGGCTGTATTGAGCCAACTTGGGGATGAGGACAGAAGATTTTCAACTAAATGGTGGTTTGACCATAAA
TCAAAAGATAAGGGTTATCTGTCATTGAGTAATCTCAACGAATCGGGCTTTCTTCATGATGATACTATGATGGTTGAATCGAAAATTAATGTCATCTCTACTTTGAAAAA
TTGTTTTGTGCACAAATCAATACCGAAAACTAACGAATCGATTCTTGCCAATCTATGGTCGATAATCAATCTAGACAGAGTAAGGAAGAGTCGTCACAGTTTAGAAGTTT
CAGATCAAGATGGAGACGAACAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
CTAAGATCCTCAAGAGTTGAAAAACCTCTGCATTATACCTTAAAGATCCAATCTTTTTCGTTGCTTAAGGCTGCACTTGCTGGTTCCAAGCGTGACAGATATGAATCCCA
GATCTTCAATGCAGGAGGAAAAGAAAAGTGTCGGATCATATCTCTGTGTATTTGGAGAATACGGGTTCGTCCTGAAAGTGACTATTTGTCCTTGATCTTGGTATTTGATG
GTTTCAAGGAGGTTTCCCAAGGTTTTCAAGTTGAATTTGAGTTGGCTGTATTGAGCCAACTTGGGGATGAGGACAGAAGATTTTCAACTAAATGGTGGTTTGACCATAAA
TCAAAAGATAAGGGTTATCTGTCATTGAGTAATCTCAACGAATCGGGCTTTCTTCATGATGATACTATGATGGTTGAATCGAAAATTAATGTCATCTCTACTTTGAAAAA
TTGTTTTGTGCACAAATCAATACCGAAAACTAACGAATCGATTCTTGCCAATCTATGGTCGATAATCAATCTAGACAGAGTAAGGAAGAGTCGTCACAGTTTAGAAGTTT
CAGATCAAGATGGAGACGAACAAGCTTAA
Protein sequenceShow/hide protein sequence
LRSSRVEKPLHYTLKIQSFSLLKAALAGSKRDRYESQIFNAGGKEKCRIISLCIWRIRVRPESDYLSLILVFDGFKEVSQGFQVEFELAVLSQLGDEDRRFSTKWWFDHK
SKDKGYLSLSNLNESGFLHDDTMMVESKINVISTLKNCFVHKSIPKTNESILANLWSIINLDRVRKSRHSLEVSDQDGDEQA