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Spg008575 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008575
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontrafficking protein particle complex subunit 2
Genome locationscaffold10:32579129..32585607
RNA-Seq ExpressionSpg008575
SyntenySpg008575
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604699.1 Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]8.9e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

KAG7034830.1 Trafficking protein particle complex subunit 2B [Cucurbita argyrosperma subsp. argyrosperma]8.9e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

XP_022947788.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita moschata]8.9e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

XP_022947789.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata]8.9e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

XP_022970900.1 trafficking protein particle complex subunit 2 isoform X1 [Cucurbita maxima]8.9e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

TrEMBL top hitse value%identityAlignment
A0A0A0LQF1 Uncharacterized protein1.3e-2998.59Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

A0A6J1G7K7 trafficking protein particle complex subunit 2 isoform X14.3e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

A0A6J1G7X4 transport protein particle 20 kDa subunit isoform X24.3e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

A0A6J1I1U1 transport protein particle 20 kDa subunit isoform X24.3e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

A0A6J1I468 trafficking protein particle complex subunit 2 isoform X14.3e-30100Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV

SwissProt top hitse value%identityAlignment
F1SRI0 Trafficking protein particle complex subunit 23.1e-0931.19Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS            A H+       V  +
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ

Query:  ESISSVYLD
        + I + + D
Subjt:  ESISSVYLD

P0DI81 Trafficking protein particle complex subunit 24.1e-0930.28Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS            A H+       +  +
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ

Query:  ESISSVYLD
        + I + + D
Subjt:  ESISSVYLD

Q3T0F2 Trafficking protein particle complex subunit 23.1e-0931.19Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS            A H+       V  +
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ

Query:  ESISSVYLD
        + I + + D
Subjt:  ESISSVYLD

Q5RES6 Trafficking protein particle complex subunit 23.1e-0931.19Show/hide
Query:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ
        M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS            A H+       V  +
Subjt:  MATTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQ

Query:  ESISSVYLD
        + I + + D
Subjt:  ESISSVYLD

Q9VUZ1 Probable trafficking protein particle complex subunit 22.4e-0946.48Show/hide
Query:  TTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVS
        +T  F+IV +N+ PIYE E   V    ++ED   L QFI HA+LD+V +  W T+ M LK++DRFN   VS
Subjt:  TTACFIIVSRNNIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVS

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein5.0e-3190.14Show/hide
Query:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV
        MA TACFIIV RN+IPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSV
Subjt:  MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACGGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTACTATACT
TAATCCCCTCTACTTGCCCGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTCCGTGCACTCGCAAGAAAGTATCTCTAGTGTTTACCTTGATTGCAGACCAAAT
GTGCTTTGTAACAATGAGCTTCAACGTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACGGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGAGAGGATTCTGCTCAGCTGCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTACTATACT
TAATCCCCTCTACTTGCCCGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTCCGTGCACTCGCAAGAAAGTATCTCTAGTGTTTACCTTGATTGCAGACCAAAT
GTGCTTTGTAACAATGAGCTTCAACGTTTCTAG
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVLYLIPSTCPDPASHLHISTQKSVHSQESISSVYLDCRPN
VLCNNELQRF