; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008578 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008578
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:31194142..31200289
RNA-Seq ExpressionSpg008578
SyntenySpg008578
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.6e-1837.79Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q          G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.9e-2038.37Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK      + P     D ++++     +G R             R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q          G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.7e-2038.2Show/hide
Query:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP
        +KYMSAEE       L+ K+ +++ +R       S+ +K+ R                      + Q D  +KFE+YTPT++P EQ+LMEI++  LL  P
Subjt:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP

Query:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
          +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++   D   P  EIR
Subjt:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]4.6e-1837.79Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K  
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q          G+ +  P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

XP_030948866.1 uncharacterized protein LOC115972746 [Quercus lobata]5.1e-1739.76Show/hide
Query:  DPPFTEEKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP
        D  +   KYM+AE+ L    L  E K      +D+R+D+ ++    G  R D  R RP  GR           F  +TP + P +Q+LM+I+N   L  P
Subjt:  DPPFTEEKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP

Query:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD-QRWPRPTRDD
         KLK NP+ R + +YC FHRDHGH T NC  LK +IEALIR G L+ F +K   D    P P R++
Subjt:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEAD-QRWPRPTRDD

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128052.2e-1837.79Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q          G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-2038.37Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK      + P     D ++++     +G R             R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q          G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DYL6 uncharacterized protein LOC1110257852.2e-1837.79Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K  
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q          G+ +  P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DZ52 uncharacterized protein LOC1110256128.2e-2138.2Show/hide
Query:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP
        +KYMSAEE       L+ K+ +++ +R       S+ +K+ R                      + Q D  +KFE+YTPT++P EQ+LMEI++  LL  P
Subjt:  EKYMSAEEL------LKSKKLEREHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAP

Query:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR
          +K+ P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++   D   P  EIR
Subjt:  RKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR

A0A7N2N013 Ribonuclease H9.3e-1741.72Show/hide
Query:  KYMSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS
        KYM+AE+ L S++      RP   DR  DSR+D+ ++    G  R D  R +P  GR           F  +TP + P +Q+LM+I++   L  P KLKS
Subjt:  KYMSAEELLKSKKLEREHKRPSSSDR--DSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +P  R + +YC FHRDHGH T +C  LK +IEALIR G L++F  K   DQ
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGAGTGTGTTTCACTGGCTAGAACGCTTGTTCTCGAGTCTGAAGCTTCGATTGATTCTTGGAGTCTTGAAGTCTTTGAACATTCGAGGGAACATTCAGAAGCTCG
AAGAGGTTGTGTCGACATTCCAGGGGCTGGAAAACCGACCCAGAGGAGGAACCGACCAAAGGGCCGGGCCAGCTTGGCCCGACCCAAATGGTCGGCCTCGGCCTTAGGCC
GAGGCCGAGCGTTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACCATTCGGCCCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCCAATGTCGCTAGCCGC
CCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTC
TCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAAATCTAGACATAAACACAGGGAATTCGGATG
GTGATCGCCACCGGCGGAGGTCACGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTC
AAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCCAGCACTAAAACCCCTGACGAGAGGCT
GGTTAGGGATCCAAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGCATGACCAGCAAGGTCAGGGGGCTCA
AACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCGAGCACACTTAAGGGGCATGACTACACAGTTTCTACCCCAAGCTATGGTCATGCTAAGACAGACCTGAGAAAT
CTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATCTGAGGCCAGGGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGC
TAGGTTGGCCGAGGCCGAGGCCAAGAAGGACAATCCCCCCTGGAAGACTGAGCTTCTAAACACACTAAAAGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTTAAAGA
ACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAGTACATGAGCGCAGAAGAGTTGCTCAAATCAAAAAAGTTAGAACGT
GAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACTATAGCCGAGGCCGACCAGATCA
TGGCCGAGGCCGACTAGACCAAGGAGACTACCTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAAATTTTGATGGAGATAAGGAATACAAACCTGC
TCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGCCTCTTTCATCGAGATCATGGACATTCAACCAGAAACTGCATTCAGCTAAAG
GACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAATTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCAAGGCCGACCAGAGATGACCCAGGCAAAGACAA
GGGTGGACCTCAACTGGAAATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGAGTGTGTTTCACTGGCTAGAACGCTTGTTCTCGAGTCTGAAGCTTCGATTGATTCTTGGAGTCTTGAAGTCTTTGAACATTCGAGGGAACATTCAGAAGCTCG
AAGAGGTTGTGTCGACATTCCAGGGGCTGGAAAACCGACCCAGAGGAGGAACCGACCAAAGGGCCGGGCCAGCTTGGCCCGACCCAAATGGTCGGCCTCGGCCTTAGGCC
GAGGCCGAGCGTTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACCATTCGGCCCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCCAATGTCGCTAGCCGC
CCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTC
TCTTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGGGATGGAGATGAGAAATCTAGACATAAACACAGGGAATTCGGATG
GTGATCGCCACCGGCGGAGGTCACGGGAAGAAGGCCGAGATCGGCCTCGGACTGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTC
AAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCAGGATACTTCGTATCTTGGATAAACCTGGTCCCAGCACTAAAACCCCTGACGAGAGGCT
GGTTAGGGATCCAAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGCATGACCAGCAAGGTCAGGGGGCTCA
AACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCGAGCACACTTAAGGGGCATGACTACACAGTTTCTACCCCAAGCTATGGTCATGCTAAGACAGACCTGAGAAAT
CTGATCGAGGAGAAGCGCAGAAGTGCCAAAACTGCCGAATCTGAGGCCAGGGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGC
TAGGTTGGCCGAGGCCGAGGCCAAGAAGGACAATCCCCCCTGGAAGACTGAGCTTCTAAACACACTAAAAGAGCTTGGAAATCCACAGGGATACCTGCAGAAGTTAAAGA
ACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAGTACATGAGCGCAGAAGAGTTGCTCAAATCAAAAAAGTTAGAACGT
GAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACTATAGCCGAGGCCGACCAGATCA
TGGCCGAGGCCGACTAGACCAAGGAGACTACCTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAAATTTTGATGGAGATAAGGAATACAAACCTGC
TCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGCCTCTTTCATCGAGATCATGGACATTCAACCAGAAACTGCATTCAGCTAAAG
GACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAATTCACCACTAAGGCCGAGGCAGACCAGAGGTGGCCAAGGCCGACCAGAGATGACCCAGGCAAAGACAA
GGGTGGACCTCAACTGGAAATTCGTTGA
Protein sequenceShow/hide protein sequence
MCECVSLARTLVLESEASIDSWSLEVFEHSREHSEARRGCVDIPGAGKPTQRRNRPKGRASLARPKWSASALGRGRALWSASAQGRGRPFGPLARAELGHLLSVPNVASR
PGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFSLLQATSSPSSTNLPLVAREGQGMEMRNLDINTGNSDGDRHRRRSREEGRDRPRTESPRPRSPLPSSREKQADL
KFAALENKVSAMDHNLSRILRILDKPGPSTKTPDERLVRDPRKGKEPIEYTAESETRSKGKKTSSMTSKVRGLKPTDRTILRSPESSTLKGHDYTVSTPSYGHAKTDLRN
LIEEKRRSAKTAESEARAAEAEARAAEAEARAAEAEARLAEAEAKKDNPPWKTELLNTLKELGNPQGYLQKLKNSGAQDLEELIDQVDPPFTEEKYMSAEELLKSKKLER
EHKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRLDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLK
DEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIR