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Spg008689 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008689
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:31472597..31477088
RNA-Seq ExpressionSpg008689
SyntenySpg008689
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7123603.1 hypothetical protein RHSIM_Rhsim12G0104200 [Rhododendron simsii]4.8e-0945.78Show/hide
Query:  LADLKVRNPSH---ATSTCHGCRRYESISAWT--MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF
        LA   +R P+H        H  R Y     +T  MG+ KFYVVFVGRNPGIY  W  C  QVN+F G +HK Y ++ EA  A+
Subjt:  LADLKVRNPSH---ATSTCHGCRRYESISAWT--MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF
MBQ3579380.1 ribonuclease H family protein [Bacteroidales bacterium]1.1e-0845Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEVVPFIMDSI
        KFYVV+ G +PGIY SW EC  Q+  F GA +KSY T  EAE AF+H  A    +P+  D+  +     + V P ++DSI
Subjt:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEVVPFIMDSI
NCC72613.1 ribonuclease H [Sphingobacteriia bacterium]8.2e-0947.44Show/hide
Query:  TMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEVV
        T   +KFYVV+VGRNPGIY SW EC  Q+++F+GA +KS+PT + A  AFR  +       + + + EV  NLP E V
Subjt:  TMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEVV
RYR74402.1 hypothetical protein Ahy_A02g009104 [Arachis hypogaea]6.7e-1148.57Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPA
        K+YVVF+GR PGIY+SW  CH QVN+F G LHKSY TF EA  AF  +++  R +  L +   +   + A
Subjt:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPA
WP_150456826.1 ribonuclease H family protein [Paenibacillus spiritus]4.8e-0957.63Show/hide
Query:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE
        M  TK+YVV+VGR PGIY SW EC RQ +QF GA +KSY + QEAE A+R    G  G+
Subjt:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE
TrEMBL top hitse value%identityAlignment
A0A061N9J9 Ribonuclease H2.0e-0858Show/hide
Query:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR
        M   K+YVV+ GR PGIYT+W EC  +V  FKGA  KSYPT++EA+ AF+
Subjt:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR
A0A445EFW3 Cauli_VI domain-containing protein3.2e-1148.57Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPA
        K+YVVF+GR PGIY+SW  CH QVN+F G LHKSY TF EA  AF  +++  R +  L +   +   + A
Subjt:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPA
A0A5J5GH46 Ribonuclease H2.3e-0957.63Show/hide
Query:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE
        M  TK+YVV+VGR PGIY SW EC RQ +QF GA +KSY + QEAE A+R    G  G+
Subjt:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGE
F3ZQE7 Ribonuclease H1.5e-0860Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF
        K+YVV+ G NPGIYTSW +C  Q+N ++GAL+KS+PT ++AEYA+
Subjt:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF
R6MV15 Ribonuclease H2.0e-0842.25Show/hide
Query:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF----RHYVAGTRGEPNLVDQHEVCRN
        KFYVV+ G  PGIY+SW +C  Q+  +KGA++KS+ T +EAE+AF     HY+ G+R + +   + ++  N
Subjt:  KFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAF----RHYVAGTRGEPNLVDQHEVCRN
SwissProt top hitse value%identityAlignment
Q04740 Ribonuclease H4.8e-0427.27Show/hide
Query:  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAE------YAFRHYVAGTRGEPNLVDQHEVCRNLPAEVVPFIMDSITPHELVSVLSIMADS
        FY V  GR  GIY +W EC  QV+ + GA++K + ++++A+          +Y + T     +   H   + +     P    S+T     S LS  A++
Subjt:  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAE------YAFRHYVAGTRGEPNLVDQHEVCRNLPAEVVPFIMDSITPHELVSVLSIMADS

Query:  QRQLFNLINSFMNNHPRIENQ
             N   S  +N P IE++
Subjt:  QRQLFNLINSFMNNHPRIENQ
Q07762 Ribonuclease H1.2e-0555Show/hide
Query:  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEA
        FYVV VGR  GIY++W +C  QV  F GA++KS+ T  EA
Subjt:  FYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEA
Q7TBL3 Transactivator/viroplasmin protein4.8e-0435Show/hide
Query:  RRYESISAWTMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR
        R   S+    +   KFYV+F     GI++ W +    +   KGA+HKSYPT + A+ A +
Subjt:  RRYESISAWTMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFR
Q9KEI9 Ribonuclease H9.1e-1144.74Show/hide
Query:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEV
        M  +K+YVV+ GR PGIYTSW  C  QV  + GA  KSYP+ +EAE AFR    G    P L  +  +  +L  +V
Subjt:  MGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEPNLVDQHEVCRNLPAEV
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTGTAACCTCATTTCTTCCTTCGTTCTTCACATGTTCTTGCCCTCTCTCCTTCTCCTCTCTTCTGGGTTGGCAGATCTGAAGGTTAGAAACCCATCTCATGCCAC
TTCAACTTGTCATGGGTGTCGACGATATGAATCGATATCCGCTTGGACTATGGGGGCAACGAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACTTCCT
GGGTTGAATGCCACAGACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTATGTTGCGGGCACCCGT
GGCGAACCAAACCTAGTTGACCAACATGAAGTGTGTCGTAACCTTCCTGCTGAAGTAGTACCGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTC
AATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGACACCAGATA
AGGCAGTTAGCCTGCTTCCGGTTGATTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTGTAACCTCATTTCTTCCTTCGTTCTTCACATGTTCTTGCCCTCTCTCCTTCTCCTCTCTTCTGGGTTGGCAGATCTGAAGGTTAGAAACCCATCTCATGCCAC
TTCAACTTGTCATGGGTGTCGACGATATGAATCGATATCCGCTTGGACTATGGGGGCAACGAAATTCTATGTCGTGTTTGTTGGTCGCAACCCAGGAATTTACACTTCCT
GGGTTGAATGCCACAGACAAGTTAACCAGTTTAAGGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTATGTTGCGGGCACCCGT
GGCGAACCAAACCTAGTTGACCAACATGAAGTGTGTCGTAACCTTCCTGCTGAAGTAGTACCGTTCATAATGGATTCCATAACCCCACATGAACTTGTGTCCGTACTTTC
AATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAACCACCCTAGGATAGAAAACCAAACTCCATACCTCAGACACCAGACACCAGATA
AGGCAGTTAGCCTGCTTCCGGTTGATTCATGA
Protein sequenceShow/hide protein sequence
MVCNLISSFVLHMFLPSLLLLSSGLADLKVRNPSHATSTCHGCRRYESISAWTMGATKFYVVFVGRNPGIYTSWVECHRQVNQFKGALHKSYPTFQEAEYAFRHYVAGTR
GEPNLVDQHEVCRNLPAEVVPFIMDSITPHELVSVLSIMADSQRQLFNLINSFMNNHPRIENQTPYLRHQTPDKAVSLLPVDS