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Spg008715 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008715
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:37632038..37632800
RNA-Seq ExpressionSpg008715
SyntenySpg008715
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-2840.62Show/hide
Query:  LVPPLSSFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWVEQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVD
        + P L S     +  YI IAEMMGPACSGF  NEERKCIEAEK +FD WV+   +R IE                     ++DM+++ ED  +P+P  ++
Subjt:  LVPPLSSFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWVEQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVD

Query:  PTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
        P  GED+ +TPTS A  AG SR S++ +   GD++D        T+ +I KIA W   K E+E +  K LY +LQ IPG+ +  C    E L
Subjt:  PTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2435.6Show/hide
Query:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP
        MMGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TP+++ L+     + ++DM+++ ED  +P+P  ++P
Subjt:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP

Query:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
          GED+++TPTS A   G S+ S++ +    D++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]3.8e-2837.38Show/hide
Query:  SFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWV--------------------EQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNV
        +F  G    Y  IAEMMGPACSGF  NE +KCIE EK +FD WV                    E  + R     G  +TPV+++ +     + ++DM++
Subjt:  SFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWV--------------------EQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNV

Query:  DFEDCYVPSPSVVDPTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCR
        + ED  +P+P  ++P  GED+ +TPTS    AG SR S++ +   GD++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C 
Subjt:  DFEDCYVPSPSVVDPTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCR

Query:  TSQECL
           E L
Subjt:  TSQECL

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-2436.13Show/hide
Query:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP
        MMGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TPV++ L+     + ++DM+++ ED  +P+P  ++P
Subjt:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP

Query:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
          GED+++TPTS A   G SR S++ +    D++D        T+ +I KI  W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]4.3e-2435.26Show/hide
Query:  MGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDPT
        MGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TP+++ L+     + ++DM+++ ED  +P+P  ++P 
Subjt:  MGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDPT

Query:  MGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
         GED+++TPTS A   G S+ S++ +    D++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  MGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992482.1e-2435.26Show/hide
Query:  MGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDPT
        MGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TP+++ L+     + ++DM+++ ED  +P+P  ++P 
Subjt:  MGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDPT

Query:  MGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
         GED+++TPTS A   G S+ S++ +    D++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  MGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

A0A5A7U7F7 Retrotransposon protein1.4e-2840.62Show/hide
Query:  LVPPLSSFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWVEQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVD
        + P L S     +  YI IAEMMGPACSGF  NEERKCIEAEK +FD WV+   +R IE                     ++DM+++ ED  +P+P  ++
Subjt:  LVPPLSSFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWVEQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVD

Query:  PTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
        P  GED+ +TPTS A  AG SR S++ +   GD++D        T+ +I KIA W   K E+E +  K LY +LQ IPG+ +  C    E L
Subjt:  PTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

A0A5A7VGQ0 Retrotransposon protein5.5e-2535.6Show/hide
Query:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP
        MMGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TP+++ L+     + ++DM+++ ED  +P+P  ++P
Subjt:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP

Query:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
          GED+++TPTS A   G S+ S++ +    D++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

A0A5D3C7T4 Uncharacterized protein1.8e-2837.38Show/hide
Query:  SFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWV--------------------EQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNV
        +F  G    Y  IAEMMGPACSGF  NE +KCIE EK +FD WV                    E  + R     G  +TPV+++ +     + ++DM++
Subjt:  SFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWV--------------------EQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNV

Query:  DFEDCYVPSPSVVDPTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCR
        + ED  +P+P  ++P  GED+ +TPTS    AG SR S++ +   GD++D        T+ +I KIA W   K E+E +  K LYAELQ IPG+ +  C 
Subjt:  DFEDCYVPSPSVVDPTMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCR

Query:  TSQECL
           E L
Subjt:  TSQECL

A0A5D3CKC1 Retrotransposon protein2.1e-2436.13Show/hide
Query:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP
        MMGPACS F  NEE+KCIEA+K +FD WV+                      + R     G  +TPV++ L+     + ++DM+++ ED  +P+P  ++P
Subjt:  MMGPACSGFSLNEERKCIEAEKDIFDAWVEQ--------------------WYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDP

Query:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL
          GED+++TPTS A   G SR S++ +    D++D        T+ +I KI  W   K E+E +  K LYAELQ IPG+ +  C    E L
Subjt:  TMGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTTCTCTCTCACTATTCCTCGTTCCTCCCCTTTCTTCGTTCTCGCATGGTCGTCGATTACCCTACATCGGGATTGCAGAGATGATGGGGCCAGCTTGTAGTGG
GTTCAGTTTGAATGAGGAGCGTAAATGCATCGAGGCTGAGAAGGACATTTTTGATGCATGGGTCGAGCAATGGTATTCGAGAAGGATAGAGCGACGGGGAGCAGCCCGCA
CTCCAGTTGACCTAGCACTAGAACCAGAACATGTAGCTGATCTAGACAATGACATGAACGTTGACTTTGAAGATTGCTACGTCCCCAGCCCATCTGTTGTTGATCCCACC
ATGGGGGAGGACATAAACACGACACCAACGAGCAAAGCTGGTGGTGCAGGGTTGTCTCGATCATCCCAGAGGTGGCAGTTGTCTATAGGAGACGTGGTTGATGTCCTAGA
GAATGGGTTCGAGTTGACAGCATCTCAGATTGAGAAAATTGCATTATGGCCAACGAGCAAGGACGAGATGGAACAAAACTATCAGAAGGAGTTGTATGCAGAGTTGCAGA
ACATCCCAGGAGTGTTTATGCAGAGTTGCAGAACATCCCAAGAGTGTCTATGCAAGACGGCTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTTCTCTCTCACTATTCCTCGTTCCTCCCCTTTCTTCGTTCTCGCATGGTCGTCGATTACCCTACATCGGGATTGCAGAGATGATGGGGCCAGCTTGTAGTGG
GTTCAGTTTGAATGAGGAGCGTAAATGCATCGAGGCTGAGAAGGACATTTTTGATGCATGGGTCGAGCAATGGTATTCGAGAAGGATAGAGCGACGGGGAGCAGCCCGCA
CTCCAGTTGACCTAGCACTAGAACCAGAACATGTAGCTGATCTAGACAATGACATGAACGTTGACTTTGAAGATTGCTACGTCCCCAGCCCATCTGTTGTTGATCCCACC
ATGGGGGAGGACATAAACACGACACCAACGAGCAAAGCTGGTGGTGCAGGGTTGTCTCGATCATCCCAGAGGTGGCAGTTGTCTATAGGAGACGTGGTTGATGTCCTAGA
GAATGGGTTCGAGTTGACAGCATCTCAGATTGAGAAAATTGCATTATGGCCAACGAGCAAGGACGAGATGGAACAAAACTATCAGAAGGAGTTGTATGCAGAGTTGCAGA
ACATCCCAGGAGTGTTTATGCAGAGTTGCAGAACATCCCAAGAGTGTCTATGCAAGACGGCTTGGTGA
Protein sequenceShow/hide protein sequence
MSASLSLFLVPPLSSFSHGRRLPYIGIAEMMGPACSGFSLNEERKCIEAEKDIFDAWVEQWYSRRIERRGAARTPVDLALEPEHVADLDNDMNVDFEDCYVPSPSVVDPT
MGEDINTTPTSKAGGAGLSRSSQRWQLSIGDVVDVLENGFELTASQIEKIALWPTSKDEMEQNYQKELYAELQNIPGVFMQSCRTSQECLCKTAW