CuGenDBv2

Gene ID	Spg008812
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S1 homolog A isoform X2
Genome location	scaffold10:37007917..37010184
RNA-Seq Expression	Spg008812
Synteny	Spg008812
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578864.1 Protein PIGMENT DEFECTIVE 338, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-103

59.38

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP D+VV VVVSG ENKLDINVGADLLGTMLTKEVLPL+DKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD A SRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-------------------FLK--------------------------------------LLTHPLECSSVG--
        +E LRAFLPKAELLNRV+NFTE KEN                   +L+                                       +T   +  +VG  
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-------------------FLK--------------------------------------LLTHPLECSSVG--

Query:  ------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
               SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+RQ+LP VEG   PEPAPT DL FENE +MYANWKWFKFER
Subjt:  ------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

KAG7016396.1 30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-103

58.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFKS D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP D+VV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD A SRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+RQ+LP VEG   PEPAPT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

XP_022994056.1 uncharacterized protein LOC111489862 [Cucurbita maxima]

5.7e-103

58.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N  ENEALAPFMKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD AVSRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVF EAKIMAKK+RQ+LPAVEG   PEPAPT DL F+NE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

XP_023551503.1 uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo]

8.8e-104

58.5

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KA KLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD AVSRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+RQ+LPAVEG   PEPAPT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

XP_038886053.1 protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida]

5.2e-104

58.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+KDS +EEEEEEK L+AFEEKIDGDDETEK NKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEM
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV Y+ A SRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT
        +E LRAFLPKAELLNRV+NFTE KEN     F+++                                                               +T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMA+++RQ+LP ++GI  PEPAPT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TVE5 30S ribosomal protein S1-like protein A isoform X2

4.4e-101

57.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEM
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV Y+ A SRG GP RPVVE                     TR  F  L +     IK L +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT
        +E LRAFLPKAELLNRV+NFTE KEN     F+++                                                               +T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFI+NKEKVFSEAKIMAKK+RQ+LPA++GIP  + APT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

A0A5D3BZ92 30S ribosomal protein S1-like protein A isoform X2

4.4e-101

57.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKEM
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV Y+ A SRG GP RPVVE                     TR  F  L +     IK L +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT
        +E LRAFLPKAELLNRV+NFTE KEN     F+++                                                               +T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKL---------------------------------------------------------------LT

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFI+NKEKVFSEAKIMAKK+RQ+LPA++GIP  + APT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

A0A6J1FIE7 uncharacterized protein LOC111445605 isoform X2

2.6e-101

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD AVSRG GP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKE VFSEAKIMAKK+RQ+LP VEG   PEPAPT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

A0A6J1FMS2 uncharacterized protein LOC111445605 isoform X1

3.6e-103

58.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N DENEALAPFMKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD AVSRG GP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVFSEAKIMAKK+RQ+LP VEG   PEPAPT DL FENE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

A0A6J1JY23 uncharacterized protein LOC111489862

2.8e-103

58.25

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Query:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM
        N  ENEALAPFMKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E  KANKLNVEYYEPKP DVVV VVVSG ENKLDINVGADLLGTMLTKEVLPLYDKE+
Subjt:  NSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEM

Query:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-
        EFL+CDLD DAESFM+NGKMGLV YD AVSRGPGP RPVVE                     TR  F  L +     IKRL +PIEVKISEWNTGGLLT 
Subjt:  EFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVE---------------------TRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLT-

Query:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T
        +E LRAFLPKAELLNRV+NFTE KEN     F++++                                                               T
Subjt:  LESLRAFLPKAELLNRVHNFTESKEN-----FLKLL---------------------------------------------------------------T

Query:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER
           +  +VG         SMF     L    IADLESEPGLFISNKEKVF EAKIMAKK+RQ+LPAVEG   PEPAPT DL F+NE +MYANWKWFKFER
Subjt:  HPLECSSVG--------YSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

SwissProt top hits

e value

%identity

Alignment

Q9M9H4 Protein PIGMENT DEFECTIVE 338, chloroplastic

2.6e-58

39.85

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Query:  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEME
        +D++  L PF+KFFK ++  E  E E              DET+   +++VEYY+PKP D VV VVVSG ENKLD+N+GAD+LGTMLTKE+LPLYDKE++
Subjt:  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEME

Query:  FLICDLDNDAESFMVNGKMGLVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLL
        +L+CDL  DAE F+VNGKMG+V  D         +R   PV                  RP++ +R  F  + +     IK+L +PIEVKI+EWNTGGLL
Subjt:  FLICDLDNDAESFMVNGKMGLVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLL

Query:  T-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHPLE-------CSSVGYS--MFRTSPVLE------LP-------------------------
        T +E LRAF+PK EL+ +V+ FTE KEN    FL  +T   E          V +     R   +LE      LP                         
Subjt:  T-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHPLE-------CSSVGYS--MFRTSPVLE------LP-------------------------

Query:  -----------------------------RIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAP-TIDLLFENEWNMYANWKWFKFE
                                      IADLESEPGLFIS++EKVF+EA+ MAKK+R+K+P V   P  +  P T       +  +YANW+WFKFE
Subjt:  -----------------------------RIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAP-TIDLLFENEWNMYANWKWFKFE

Arabidopsis top hits

e value

%identity

Alignment

AT1G71720.1 Nucleic acid-binding proteins superfamily

1.9e-59

39.85

Show/hide

Query:  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEME
        +D++  L PF+KFFK ++  E  E E              DET+   +++VEYY+PKP D VV VVVSG ENKLD+N+GAD+LGTMLTKE+LPLYDKE++
Subjt:  SDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADLLGTMLTKEVLPLYDKEME

Query:  FLICDLDNDAESFMVNGKMGLVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLL
        +L+CDL  DAE F+VNGKMG+V  D         +R   PV                  RP++ +R  F  + +     IK+L +PIEVKI+EWNTGGLL
Subjt:  FLICDLDNDAESFMVNGKMGLVIYD------GAVSRGPGPV------------------RPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLL

Query:  T-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHPLE-------CSSVGYS--MFRTSPVLE------LP-------------------------
        T +E LRAF+PK EL+ +V+ FTE KEN    FL  +T   E          V +     R   +LE      LP                         
Subjt:  T-LESLRAFLPKAELLNRVHNFTESKEN----FLKLLTHPLE-------CSSVGYS--MFRTSPVLE------LP-------------------------

Query:  -----------------------------RIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAP-TIDLLFENEWNMYANWKWFKFE
                                      IADLESEPGLFIS++EKVF+EA+ MAKK+R+K+P V   P  +  P T       +  +YANW+WFKFE
Subjt:  -----------------------------RIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAP-TIDLLFENEWNMYANWKWFKFE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACGCGGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTAATCCTTGCGGGACTTCAACCCTAGGATGGAATTCCGACGAGAATGAGGCTTTGGCGCC
ATTTATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAG
CCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCTCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTA
TTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATTTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGAT
GGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTCGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAA
TAAAACGACTCTTTAAGCCAATTGAAGTTAAAATATCGGAGTGGAATACTGGAGGCCTTCTTACACTTGAGAGTTTGCGAGCATTTCTTCCAAAGGCTGAGTTATTGAAT
CGAGTACATAACTTCACAGAGTCAAAAGAAAATTTTCTGAAGTTATTGACGCATCCGCTCGAATGTTCCTCAGTGGGTTACTCCATGTTTCGAACATCACCCGTGCTCGA
GTTACCTCGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTAC
CTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATGGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG

mRNA sequence

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Protein sequence

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MRRGRAQLMRWAAKKDANPCGTSTLGWNSDENEALAPFMKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVSGIENKLDINVGADL
LGTMLTKEVLPLYDKEMEFLICDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVETRTEFCLLWFWEGHSIKRLFKPIEVKISEWNTGGLLTLESLRAFLPKAELLN
RVHNFTESKENFLKLLTHPLECSSVGYSMFRTSPVLELPRIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENEWNMYANWKWFKFER

Spg008812 (gene) of Sponge gourd (cylindrica) v1 genome