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Spg008825 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008825
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:30079447..30082168
RNA-Seq ExpressionSpg008825
SyntenySpg008825
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.0e-1151.02Show/hide
Query:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        +S  E  + PRGNR  LQT EL KT                 VEIELPV DTLPMSAESS S+S S         + EDDV WLH +FR K AGGPGG
Subjt:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-1343.85Show/hide
Query:  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ----------------------------
        LFGL Y EGTKRPRGNR+ LQT EL KT                 VEIELPVPDTLP SAESS S+SS+  +                            
Subjt:  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ----------------------------

Query:  -EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
          G    +  D+V WLHA+F  K AGGPGG
Subjt:  -EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-1440.79Show/hide
Query:  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRSGLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ---
        K +AKPAIAES  N      LFGLSY E  +                       PRGNR  L T +L KTVEIELPVPDTLP SAESS+S+SS+  +   
Subjt:  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRSGLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ---

Query:  -----------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
                               EG    +  DD+ WLHA+F  K AG PGG
Subjt:  -----------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]7.5e-1153.33Show/hide
Query:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        RPRGNR  LQT +L KT                 VEIELPVPDTLP SAES  S+S ST        +  DDV WLHA+FR K AGGPGG
Subjt:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.7e-1041.13Show/hide
Query:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQRV
        +S  E  + PRGNRS LQT EL KT                 VEIELPVPDTLP SAES  S+SS+  +                          EG   
Subjt:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQRV

Query:  SLEEDDVRWLHAIFRTKLAGGPGG
         +  DDV WLH +FR K+AGGPGG
Subjt:  SLEEDDVRWLHAIFRTKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.7e-1343.85Show/hide
Query:  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ----------------------------
        LFGL Y EGTKRPRGNR+ LQT EL KT                 VEIELPVPDTLP SAESS S+SS+  +                            
Subjt:  LFGLSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ----------------------------

Query:  -EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
          G    +  D+V WLHA+F  K AGGPGG
Subjt:  -EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein9.2e-1540.79Show/hide
Query:  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRSGLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ---
        K +AKPAIAES  N      LFGLSY E  +                       PRGNR  L T +L KTVEIELPVPDTLP SAESS+S+SS+  +   
Subjt:  KAHAKPAIAESEFNLSTSGFLFGLSYTEGTK----------------------RPRGNRSGLQTRELAKTVEIELPVPDTLPMSAESSRSSSSSTFQ---

Query:  -----------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
                               EG    +  DD+ WLHA+F  K AG PGG
Subjt:  -----------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5A7VIY9 Uncharacterized protein1.8e-1041.13Show/hide
Query:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQRV
        +S  E  + PRGNRS LQT EL KT                 VEIELPVPDTLP SAES  S+SS+  +                          EG   
Subjt:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQ--------------------------EGQRV

Query:  SLEEDDVRWLHAIFRTKLAGGPGG
         +  DDV WLH +FR K+AGGPGG
Subjt:  SLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.6e-1153.33Show/hide
Query:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        RPRGNR  LQT +L KT                 VEIELPVPDTLP SAES  S+S ST        +  DDV WLHA+FR K AGGPGG
Subjt:  RPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3BSA6 Retrotrans_gag domain-containing protein9.5e-1251.02Show/hide
Query:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        +S  E  + PRGNR  LQT EL KT                 VEIELPV DTLPMSAESS S+S S         + EDDV WLH +FR K AGGPGG
Subjt:  LSYTEGTKRPRGNRSGLQTRELAKT-----------------VEIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAAGCCAAGAGAGGACGGCGCACCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACTCACATCTACTTACCCCA
ACAGGGGAAGGAGTGCATTCCAACTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCTCATAAATGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGT
TCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTA
GAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGA
TGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTCCAACCACTAAACAGGAGTTCCTCTCAAGCCAAGAGAGGACGGCGCACCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACTCACATCTACTTACCCCA
ACAGGGGAAGGAGTGCATTCCAACTTGTATTGTTATGTTCCCAGCCCCCATTCGGTCTTGCCTCATAAATGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGT
TCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTA
GAGATCGAGCTCCCGGTGCCTGATACACTGCCAATGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGA
TGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MQVQPLNRSSSQAKRGRRTFVQAPESALKGTHIYLPQQGKECIPTCIVMFPAPIRSCLINGKAHAKPAIAESEFNLSTSGFLFGLSYTEGTKRPRGNRSGLQTRELAKTV
EIELPVPDTLPMSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG