; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008827 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008827
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein TIC 40, chloroplastic isoform X2
Genome locationscaffold10:33080777..33082647
RNA-Seq ExpressionSpg008827
SyntenySpg008827
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579066.1 Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4677.7Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
KAG7016592.1 Protein TIC 40, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-4677.7Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
XP_022141408.1 protein TIC 40, chloroplastic isoform X1 [Momordica charantia]3.4e-4776.82Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS
        MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVNRRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+S
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS

Query:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        VPPPSSYVGSPLFWVGVGVGLSALF+W +S +L  Y    AF   ++ +NS
Subjt:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
XP_022141409.1 protein TIC 40, chloroplastic isoform X2 [Momordica charantia]3.4e-4776.82Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS
        MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVNRRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+S
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS

Query:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        VPPPSSYVGSPLFWVGVGVGLSALF+W +S +L  Y    AF   ++ +NS
Subjt:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
XP_022992989.1 protein TIC 40, chloroplastic-like isoform X2 [Cucurbita maxima]2.2e-4677.7Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
TrEMBL top hitse value%identityAlignment
A0A6J1CIJ9 protein TIC 40, chloroplastic isoform X21.6e-4776.82Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS
        MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVNRRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+S
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS

Query:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        VPPPSSYVGSPLFWVGVGVGLSALF+W +S +L  Y    AF   ++ +NS
Subjt:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
A0A6J1CKF2 protein TIC 40, chloroplastic isoform X11.6e-4776.82Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS
        MDRLNLALTSPPKFV L YSS+S+ISTATRTNQLCGSRRLARSRIKSP   PRICASAVNRRPNHRI+      +AERFASVSSSTTSN+SSSVGVPS+S
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSP---PRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSIS

Query:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        VPPPSSYVGSPLFWVGVGVGLSALF+W +S +L  Y    AF   ++ +NS
Subjt:  VPPPSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
A0A6J1FE53 protein TIC 40, chloroplastic-like isoform X23.1e-4677.03Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASA NRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
A0A6J1JYZ5 protein TIC 40, chloroplastic-like isoform X21.1e-4677.7Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
A0A6J1K0V5 protein TIC 40, chloroplastic-like isoform X11.1e-4677.7Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP
        MDRLNLALTS PKFVFL YSS+SSIST TRTNQLCGSRRLARSRIK PPRI ASAVNRR NHRI+      +AERFASVSSSTTSNESSSVGVPS+SVPP
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPP

Query:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
        PSSYVGSPLFWVGVGVGLSALFTW +S +L  Y    AF   ++ +NS
Subjt:  PSSYVGSPLFWVGVGVGLSALFTWGSSVFLLTY--HAAFLIAIATLNS
SwissProt top hitse value%identityAlignment
Q8GT66 Protein TIC 40, chloroplastic5.8e-1041.94Show/hide
Query:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRL-AERFASVSSSTTSNESSSVGVPSISVP
        M+ LNLAL S PK + L +SSS ++ +  R +   G+ R++ +   S     AS      +H+ L +   ++ A  FAS+SSS    E++SVGV     P
Subjt:  MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRL-AERFASVSSSTTSNESSSVGVPSISVP

Query:  PPSSYVGSPLFWVGVGVGLSALFT
        PP S VGSPLFW+G+GVG SALF+
Subjt:  PPSSYVGSPLFWVGVGVGLSALFT
Q9FMD5 Protein TIC 40, chloroplastic3.8e-0946.99Show/hide
Query:  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSYVGSPLFWVGVGVGLSALFTWGSS
        +I ASA ++ P+ R      I    + ++ FAS+ SS+   +++SV  PS+ VPPP SS +GSPLFW+GVGVGLSALF++ +S
Subjt:  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSYVGSPLFWVGVGVGLSALFTWGSS
Arabidopsis top hitse value%identityAlignment
AT5G16620.1 hydroxyproline-rich glycoprotein family protein2.7e-1046.99Show/hide
Query:  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSYVGSPLFWVGVGVGLSALFTWGSS
        +I ASA ++ P+ R      I    + ++ FAS+ SS+   +++SV  PS+ VPPP SS +GSPLFW+GVGVGLSALF++ +S
Subjt:  RICASAVNRRPNHRILGNTPI----RLAERFASVSSSTTSNESSSVGVPSISVPPP-SSYVGSPLFWVGVGVGLSALFTWGSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTGTTTTCCTCCGATATTCTTCTTCTTCTTCTATCTCCACTGCCACTAGAACCAATCAGTTATGCGGAAG
CAGGCGCTTGGCAAGGTCCCGGATTAAATCTCCTCCCAGAATTTGTGCTTCTGCCGTCAATCGTCGACCCAACCACCGTATCCTCGGTAATACTCCAATTCGTTTGGCCG
AACGGTTTGCGAGCGTTTCTTCTTCGACTACCAGCAATGAATCGTCTTCTGTTGGTGTTCCATCCATTTCAGTTCCTCCTCCCTCCTCTTATGTAGGGTCGCCTCTCTTT
TGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGGTTCTTCTGTTTTCCTTCTTACCTATCACGCTGCTTTTCTGATTGCAATAGCCACATTGAATTCTTG
TGAAGCTCTCAAGTTTAAATCTAAAATAATCCCGAGGATCACCGGGATCATTACCCCTTCATTCTTGGATTTTGGGATGCCAAATAAGCTCCGAGTTAGAAAGGAAAATC
TTCAAAAGGAATCGGAAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGGCTCAATTTAGCCCTAACATCTCCTCCCAAGTTTGTTTTCCTCCGATATTCTTCTTCTTCTTCTATCTCCACTGCCACTAGAACCAATCAGTTATGCGGAAG
CAGGCGCTTGGCAAGGTCCCGGATTAAATCTCCTCCCAGAATTTGTGCTTCTGCCGTCAATCGTCGACCCAACCACCGTATCCTCGGTAATACTCCAATTCGTTTGGCCG
AACGGTTTGCGAGCGTTTCTTCTTCGACTACCAGCAATGAATCGTCTTCTGTTGGTGTTCCATCCATTTCAGTTCCTCCTCCCTCCTCTTATGTAGGGTCGCCTCTCTTT
TGGGTTGGTGTTGGTGTTGGGCTTTCAGCATTATTTACATGGGGTTCTTCTGTTTTCCTTCTTACCTATCACGCTGCTTTTCTGATTGCAATAGCCACATTGAATTCTTG
TGAAGCTCTCAAGTTTAAATCTAAAATAATCCCGAGGATCACCGGGATCATTACCCCTTCATTCTTGGATTTTGGGATGCCAAATAAGCTCCGAGTTAGAAAGGAAAATC
TTCAAAAGGAATCGGAAAATTAG
Protein sequenceShow/hide protein sequence
MDRLNLALTSPPKFVFLRYSSSSSISTATRTNQLCGSRRLARSRIKSPPRICASAVNRRPNHRILGNTPIRLAERFASVSSSTTSNESSSVGVPSISVPPPSSYVGSPLF
WVGVGVGLSALFTWGSSVFLLTYHAAFLIAIATLNSCEALKFKSKIIPRITGIITPSFLDFGMPNKLRVRKENLQKESEN