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Spg008879 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008879
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:31175163..31177786
RNA-Seq ExpressionSpg008879
SyntenySpg008879
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]3.0e-1329.75Show/hide
Query:  KFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGI
        K  VD  V    D G+   GC++R   G    A   E+  C+SV++AE   VY+ + +A+++     +VE DS  ++K+L+G+  D + V  ++ DI  +
Subjt:  KFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGI

Query:  LHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVD-----RVWLEEWPSEISDVLRGDVVS
           + +    +  R+ NKVAH+L     ++        VWLE++PS I + L+ D+++
Subjt:  LHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVD-----RVWLEEWPSEISDVLRGDVVS

TXG72479.1 hypothetical protein EZV62_001058 [Acer yangbiense]3.0e-1331.41Show/hide
Query:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMD
        PP    F ++     R   G +G GCV+R +DG V  + C     C+   +AE   +    +LA +LG    V+E+D+L +V+ +      +SEVG+++ 
Subjt:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMD

Query:  DIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD
        DI  I   +    + F  R  NKV H L  LA  +V R VW+ + P  +  ++ GD
Subjt:  DIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD

XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]2.3e-1334.97Show/hide
Query:  DTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFT
        D    G G V+R A GEV +A CL L+  + VD+AE   +   +++A +  F +  +ETD +++   L       + +G++++DI  +     +    F 
Subjt:  DTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFT

Query:  LRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGDVVSA
         R GN  AH L  L+ SY D RVW+EE PSEIS  +  D+ SA
Subjt:  LRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGDVVSA

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.8e-1838.32Show/hide
Query:  CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLH
        CRP       PP +    V+     R ++  AG G ++R + G V++ A   L R   VD  EG+ VY+ + LA + GF  F +ETDSLR+  +L  D  
Subjt:  CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLH

Query:  DVSEVGLLMDDIRGILHPW-DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD
        D SEVG+L   I+  L    +     FT R GN  AH+L  LA +    ++W+EEWP EIS VL  D
Subjt:  DVSEVGLLMDDIRGILHPW-DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD

XP_030970599.1 uncharacterized protein LOC115990979 [Quercus lobata]2.7e-1434.59Show/hide
Query:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLE-LQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLM
        PP +    +++      +   +G G V+R  DG V MA+C E L   +  +  E     K +QLA  LGF   ++E DSL L+K L  D H++S +GLL+
Subjt:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLE-LQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLM

Query:  DDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGDVV
        +D++     + +       R GN VAH L   A S  D +VW+E+ PS +   L  DVV
Subjt:  DDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGDVV

TrEMBL top hitse value%identityAlignment
A0A2I4H8L7 uncharacterized protein LOC1090144672.1e-1231.85Show/hide
Query:  LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLM
        LPP  N F  ++         + G   ++R   GEV  A C          +AEG  + K ++L   LG  +   E DS  +VK ++    D+S  G ++
Subjt:  LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLM

Query:  DDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAF-SYVDRVWLEEWPSEISDVLRGD
        +D + I   W N  + +T R  N VAH L   A  S V++VW+EE P+ IS  L+ D
Subjt:  DDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAF-SYVDRVWLEEWPSEISDVLRGD

A0A2N9HF86 RNase H domain-containing protein1.6e-1229.56Show/hide
Query:  LKKGTRTLDSLLLLSCSPLPFSDLSIRGGVASTTPVCRFSFFCRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAE
        L++  RTL   L    SP P S         +T P  R  +      PP   ++ V+Y      ++ EAG G ++R   GEV  + C  +    S++  E
Subjt:  LKKGTRTLDSLLLLSCSPLPFSDLSIRGGVASTTPVCRFSFFCRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAE

Query:  GWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLA-FSYVDRVWLEEWPSEISDVL
         +      QLA  LGF E  +E DS+ +V  L       +  G L++D +   + + + + L   R GN VAH+L   A FS    VW+E  P +I  +L
Subjt:  GWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLA-FSYVDRVWLEEWPSEISDVL

Query:  RGD
          D
Subjt:  RGD

A0A5C7ITL2 RNase H domain-containing protein1.5e-1331.41Show/hide
Query:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMD
        PP    F ++     R   G +G GCV+R +DG V  + C     C+   +AE   +    +LA +LG    V+E+D+L +V+ +      +SEVG+++ 
Subjt:  PPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMD

Query:  DIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD
        DI  I   +    + F  R  NKV H L  LA  +V R VW+ + P  +  ++ GD
Subjt:  DIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDR-VWLEEWPSEISDVLRGD

A0A6J1DBJ7 uncharacterized protein LOC1110189738.9e-1938.32Show/hide
Query:  CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLH
        CRP       PP +    V+     R ++  AG G ++R + G V++ A   L R   VD  EG+ VY+ + LA + GF  F +ETDSLR+  +L  D  
Subjt:  CRPR-----LPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLH

Query:  DVSEVGLLMDDIRGILHPW-DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD
        D SEVG+L   I+  L    +     FT R GN  AH+L  LA +    ++W+EEWP EIS VL  D
Subjt:  DVSEVGLLMDDIRGILHPW-DNGKVLFTLRQGNKVAHVLGSLAFSYVD-RVWLEEWPSEISDVLRGD

V4UMR3 RNase H domain-containing protein (Fragment)1.6e-1232.05Show/hide
Query:  CRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEV
        C    PP   K  VD  V    D   AG G ++  + GEV  A+   +     ++  E   V+  +QL   +G A  ++E+DS  +V +++  +H   EV
Subjt:  CRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEV

Query:  GLLMDDIRGILHPWDNG-KVLFTLRQGNKVAHVLGSLAF-SYVDRVWLEEWPSEIS
        G L+ D++ +L   ++  +V F  R  N+VAH L  LA  + +++VWLEE P+EI+
Subjt:  GLLMDDIRGILHPWDNG-KVLFTLRQGNKVAHVLGSLAF-SYVDRVWLEEWPSEIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.4e-0529.91Show/hide
Query:  GDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGN
        G G +LR   G V       L R  +V  AE   +   V    +  +   + E+D+  LV +L+ D      +   ++DI+ +LH ++  K  FT R GN
Subjt:  GDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGFAEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGN

Query:  KVAHVLG--SLAFSYVD
        KVA  +   S++FS  D
Subjt:  KVAHVLG--SLAFSYVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACCAAGCTGCACATAGGTCAGCGCAAGACCAAGGTAATTCTGGACCACCATGGTGTACAAGGAGCTGACGAGGACAACCGGGCGGAGATGGGACCAGGAGACGA
CCCAGAGGAAGACCGGACCAACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCAGCTCGGTCCCCCCTGCCTCTG
GCCGCCCTAGTTCCGCTTGGCTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTATACCCCTCTTCGCCGCTGAAGAAGGGGACCCGA
ACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCCTCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCAGTGTGTAGGTTTTCTTTCTTTTG
CAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGCCTGATACAGGGGAAGCGGGGGATGGTTGTGTGCTGCGTGGGGCTGATG
GTGAGGTATTTATGGCCGCCTGTTTGGAACTACAGAGGTGTTGGAGCGTGGATTTGGCTGAGGGATGGACTGTGTATAAAGAGGTCCAACTTGCTCGGCAGTTGGGGTTT
GCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTGGTCAAAATCCTCCATGGCGATCTGCATGATGTTTCAGAAGTGGGGCTGCTAATGGATGACATTCGAGGGATTCT
CCACCCTTGGGACAACGGTAAGGTTTTGTTTACATTACGCCAGGGAAACAAGGTGGCGCATGTTCTGGGTAGTTTGGCCTTTTCATATGTTGACCGTGTTTGGCTTGAAG
AGTGGCCCAGCGAAATCTCGGATGTCCTGAGGGGTGATGTTGTTTCAGCTGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACCAAGCTGCACATAGGTCAGCGCAAGACCAAGGTAATTCTGGACCACCATGGTGTACAAGGAGCTGACGAGGACAACCGGGCGGAGATGGGACCAGGAGACGA
CCCAGAGGAAGACCGGACCAACGGGCCGGGCCAACGTGGCCCGACCCGTACGGTCGGCCCGCTTGCGCGGGCCGAGTCTGTTTGCCTCAGCTCGGTCCCCCCTGCCTCTG
GCCGCCCTAGTTCCGCTTGGCTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGAAGCATGAGCAGGTATTTATACCCCTCTTCGCCGCTGAAGAAGGGGACCCGA
ACTCTCGACTCTCTCCTCTTACTCTCTTGCTCTCCTCTTCCGTTTTCTGACTTAAGCATCAGAGGCGGTGTGGCTAGCACCACACCAGTGTGTAGGTTTTCTTTCTTTTG
CAGGCCACGTCTTCCCCCGCTCTCAAACAAATTCACTGTCGATTATCACGTGGAGCGAAGGCCTGATACAGGGGAAGCGGGGGATGGTTGTGTGCTGCGTGGGGCTGATG
GTGAGGTATTTATGGCCGCCTGTTTGGAACTACAGAGGTGTTGGAGCGTGGATTTGGCTGAGGGATGGACTGTGTATAAAGAGGTCCAACTTGCTCGGCAGTTGGGGTTT
GCGGAGTTTGTGGTAGAGACTGACTCGCTGAGGTTGGTCAAAATCCTCCATGGCGATCTGCATGATGTTTCAGAAGTGGGGCTGCTAATGGATGACATTCGAGGGATTCT
CCACCCTTGGGACAACGGTAAGGTTTTGTTTACATTACGCCAGGGAAACAAGGTGGCGCATGTTCTGGGTAGTTTGGCCTTTTCATATGTTGACCGTGTTTGGCTTGAAG
AGTGGCCCAGCGAAATCTCGGATGTCCTGAGGGGTGATGTTGTTTCAGCTGCGTGA
Protein sequenceShow/hide protein sequence
MTTKLHIGQRKTKVILDHHGVQGADEDNRAEMGPGDDPEEDRTNGPGQRGPTRTVGPLARAESVCLSSVPPASGRPSSAWLVPKRLRIPKNPRSMSRYLYPSSPLKKGTR
TLDSLLLLSCSPLPFSDLSIRGGVASTTPVCRFSFFCRPRLPPLSNKFTVDYHVERRPDTGEAGDGCVLRGADGEVFMAACLELQRCWSVDLAEGWTVYKEVQLARQLGF
AEFVVETDSLRLVKILHGDLHDVSEVGLLMDDIRGILHPWDNGKVLFTLRQGNKVAHVLGSLAFSYVDRVWLEEWPSEISDVLRGDVVSAA