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Spg008963 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008963
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold11:11089249..11090937
RNA-Seq ExpressionSpg008963
SyntenySpg008963
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040575.1 putative integrase [Cucumis melo var. makuwa]1.4e-0945.19Show/hide
Query:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSS
        HF +RVKEE EEEF GLRLKKIGKSS  ASHCRI VQ      F       S  E+H+ +Q++ +   L     +F   LD   G      L  RGNR S
Subjt:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSS

Query:  LQTGELAKT-----------------VEIELPVPD
        LQ GEL KT                 VEIEL VPD
Subjt:  LQTGELAKT-----------------VEIELPVPD

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]9.1e-0960.29Show/hide
Query:  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        LE +      FL K  G L+F     + PRGNR +L TG+L KTVEIELPVPDTLPTSAESS+S+SST
Subjt:  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]5.3e-0960.61Show/hide
Query:  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        A LD+LV NL+F          +   PRGNR SLQ G+L KTVEIELP+PDTLPTS+ESS+S+SST
Subjt:  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.0e-0785Show/hide
Query:  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        PRGNR S QTG+L KTVEIELPVPDTLPTSAESS S+SST
Subjt:  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.5e-0846.43Show/hide
Query:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQ
        HF +RVKEE EEEF GLRLKKIGKSS KA+HCRI       +P     FS                LE   SN   + D   G      + PRGNRSSLQ
Subjt:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQ

Query:  TGELAKTVEIEL
        TG+L K +EI +
Subjt:  TGELAKTVEIEL

TrEMBL top hitse value%identityAlignment
A0A5A7TGM2 Putative integrase6.8e-1045.19Show/hide
Query:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSS
        HF +RVKEE EEEF GLRLKKIGKSS  ASHCRI VQ      F       S  E+H+ +Q++ +   L     +F   LD   G      L  RGNR S
Subjt:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSS

Query:  LQTGELAKT-----------------VEIELPVPD
        LQ GEL KT                 VEIEL VPD
Subjt:  LQTGELAKT-----------------VEIELPVPD

A0A5A7UAH6 CCHC-type domain-containing protein4.4e-0960.29Show/hide
Query:  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        LE +      FL K  G L+F     + PRGNR +L TG+L KTVEIELPVPDTLPTSAESS+S+SST
Subjt:  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

A0A5A7V2F2 Uncharacterized protein2.6e-0960.61Show/hide
Query:  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        A LD+LV NL+F          +   PRGNR SLQ G+L KTVEIELP+PDTLPTS+ESS+S+SST
Subjt:  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

A0A5D3BET3 Uncharacterized protein2.4e-0785Show/hide
Query:  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST
        PRGNR S QTG+L KTVEIELPVPDTLPTSAESS S+SST
Subjt:  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

A0A5D3CAC6 Uncharacterized protein1.7e-0846.43Show/hide
Query:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQ
        HF +RVKEE EEEF GLRLKKIGKSS KA+HCRI       +P     FS                LE   SN   + D   G      + PRGNRSSLQ
Subjt:  HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQ

Query:  TGELAKTVEIEL
        TG+L K +EI +
Subjt:  TGELAKTVEIEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTTAGGGACAGAGTGAAGGAGGAGAAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATTCAAGGCCAGCCATTGCAGAATCTGTGTTCA
ACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTGAGGATAACAGAGAAGCTCGAATCTGTGTTGTCTAATTTCGGGGCATTTCTGG
ACAAATTGGTTGGGAATCTCATTTTTCATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
mRNA sequenceShow/hide mRNA sequence
CACTTTAGGGACAGAGTGAAGGAGGAGAAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATTCAAGGCCAGCCATTGCAGAATCTGTGTTCA
ACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTGAGGATAACAGAGAAGCTCGAATCTGTGTTGTCTAATTTCGGGGCATTTCTGG
ACAAATTGGTTGGGAATCTCATTTTTCATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG
Protein sequenceShow/hide protein sequence
HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKTVEIELPVP
DTLPTSAESSRSSSST