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Spg009023 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009023
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:18622132..18624483
RNA-Seq ExpressionSpg009023
SyntenySpg009023
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-0767.86Show/hide
Query:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        L GNR  + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0686.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-0664.81Show/hide
Query:  GNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        GNR  + +G +      PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++S+
Subjt:  GNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.6e-0767.86Show/hide
Query:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        L GNR  + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0686.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.4e-0664.81Show/hide
Query:  GNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        GNR  + +G +      PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++S+
Subjt:  GNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
A0A5A7V9N3 Reverse transcriptase1.3e-0767.86Show/hide
Query:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        L GNR  + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
A0A5A7VMG9 Reverse transcriptase1.1e-0686.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
A0A5D3DSY7 Putative Retrotransposon protein1.3e-0767.86Show/hide
Query:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        L GNR  + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  LVGNRVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
A0A5D3DX39 Reverse transcriptase1.1e-0686.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCGCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGC
TGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCACGGCTGGTTTTGCTGCAGCACACGATTCCGCTGGGGGTT
CGCTGGTTCTTCAGGACCTTGCGGGAGACGCGACACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCGCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGC
TGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCACGGCTGGTTTTGCTGCAGCACACGATTCCGCTGGGGGTT
CGCTGGTTCTTCAGGACCTTGCGGGAGACGCGACACATTAG
Protein sequenceShow/hide protein sequence
MLSVFGAFLGKLVGNRVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTAGFAAAHDSAGGSLVLQDLAGDATH