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Spg009051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor IIE subunit alpha
Genome locationscaffold8:17461271..17466548
RNA-Seq ExpressionSpg009051
SyntenySpg009051
Gene Ontology termsGO:0001113 - transcriptional open complex formation at RNA polymerase II promoter (biological process)
GO:0005673 - transcription factor TFIIE complex (cellular component)
InterPro domainsIPR000727 - Target SNARE coiled-coil homology domain
IPR039997 - Transcription factor E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134956.1 general transcription factor IIE subunit 1 [Momordica charantia]1.0e-2279.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_022922068.1 general transcription factor IIE subunit 1-like [Cucurbita moschata]1.0e-2279.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_022987307.1 general transcription factor IIE subunit 1-like [Cucurbita maxima]1.0e-2279.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_023515738.1 general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo]1.0e-2279.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

XP_038880290.1 general transcription factor IIE subunit 1 isoform X2 [Benincasa hispida]3.0e-2277.78Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLIS ED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

TrEMBL top hitse value%identityAlignment
A0A6J1BZ86 Transcription initiation factor IIE subunit alpha5.1e-2379.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1E5J2 Transcription initiation factor IIE subunit alpha5.1e-2379.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1EZ78 Transcription initiation factor IIE subunit alpha9.5e-2278.08Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQ-GMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQ G +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQ-GMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1JA07 Transcription initiation factor IIE subunit alpha5.1e-2379.17Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQG +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

A0A6J1KW18 Transcription initiation factor IIE subunit alpha9.5e-2278.08Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQ-GMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI
        RYTALDALRLISLED+YFHCENCNGELVAES+KL AAQ G +GDDNARKR+HEKLKD+LQKMEV ++ L  ++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQ-GMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKI

SwissProt top hitse value%identityAlignment
B7KJ74 Glucose-6-phosphate isomerase1.7e-0468.97Show/hide
Query:  MEPRFQAAFRAMEALEKGAIANPDEGRMI
        ++P+F+ AF+ ME LEKGAIANPDEGRM+
Subjt:  MEPRFQAAFRAMEALEKGAIANPDEGRMI

C6E5H7 Glucose-6-phosphate isomerase7.8e-0572.41Show/hide
Query:  MEPRFQAAFRAMEALEKGAIANPDEGRMI
        MEPR Q A++ MEALEKGA+ANPDE RM+
Subjt:  MEPRFQAAFRAMEALEKGAIANPDEGRMI

Q8H103 Glucose-6-phosphate isomerase 1, chloroplastic1.5e-0852.31Show/hide
Query:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS
        MEPRFQAAF+AME LEKG+IANPDEGRM                    I NTLD++C F++ I S
Subjt:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS

Q9LMG8 Putative SNAP25 homologous protein SNAP302.2e-0773.68Show/hide
Query:  ENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD
        E  KQDD LSD+SDIL +LK MAVDMG EID+QN ALD
Subjt:  ENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD

Q9S7P9 SNAP25 homologous protein SNAP338.3e-0769.23Show/hide
Query:  VENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD
        +E  KQDD LSD+SDIL ELK MAVDMG EI++QN  LD
Subjt:  VENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD

Arabidopsis top hitse value%identityAlignment
AT1G03280.1 Transcription factor TFIIE, alpha subunit4.4e-1958.9Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID
        +Y ALDALRLIS+ DD FHCENCNGELV E NKL + + ++GDDNAR+R+ E LK++LQK+EV ++ L  +++
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID

AT1G13890.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 301.6e-0873.68Show/hide
Query:  ENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD
        E  KQDD LSD+SDIL +LK MAVDMG EID+QN ALD
Subjt:  ENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALD

AT4G20340.1 Transcription factor TFIIE, alpha subunit1.6e-1657.53Show/hide
Query:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID
        +Y ALDALRLIS+EDD FHCENCNGELV E NKL++ + ++  DNAR+RQ EK+K  LQ +E  ++ L   I+
Subjt:  RYTALDALRLISLEDDYFHCENCNGELVAESNKLVAAQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKID

AT4G24620.1 phosphoglucose isomerase 11.1e-0952.31Show/hide
Query:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS
        MEPRFQAAF+AME LEKG+IANPDEGRM                    I NTLD++C F++ I S
Subjt:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS

AT4G24620.2 phosphoglucose isomerase 11.1e-0952.31Show/hide
Query:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS
        MEPRFQAAF+AME LEKG+IANPDEGRM                    I NTLD++C F++ I S
Subjt:  MEPRFQAAFRAMEALEKGAIANPDEGRM--------------------IHNTLDAVCNFAEMISS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTCGATTCCAAGCTGCGTTCAGGGCTATGGAGGCGCTTGAGAAGGGTGCGATTGCCAATCCGGATGAAGGACGGATGATCCATAATACTCTAGATGCCGTGTG
CAATTTCGCAGAGATGATATCATCAGTGGTAAGTGTTTTACTAGTAGCTAAGGGACACTCGTTATTGACTTCTTTAGCTGGAAGCAAGTTTGAAAAAGTTATGACATTGA
TTAGGTACACTGCTTTGGATGCTCTGCGATTAATCTCTCTTGAGGATGATTACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTAATAAACTTGTTGCT
GCTCAAGGAATGAATGGAGATGATAATGCCAGGAAGCGTCAACATGAAAAATTAAAGGACGTGCTTCAGAAGATGGAAGTTTTGATACGGAAGTTGCAGACTAAAATTGA
TCCAAGGATCGGTTTCAAAATCTTGATTGCTTCCTTGCTGGTAGAAAATGTGAAGCAAGATGATGCACTATCTGACATGAGTGATATCTTGGTAGAGCTAAAGGAAATGG
CTGTTGACATGGGTTGTGAAATTGACAGGCAGAACCATGCTCTGGATCGCGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTCGATTCCAAGCTGCGTTCAGGGCTATGGAGGCGCTTGAGAAGGGTGCGATTGCCAATCCGGATGAAGGACGGATGATCCATAATACTCTAGATGCCGTGTG
CAATTTCGCAGAGATGATATCATCAGTGGTAAGTGTTTTACTAGTAGCTAAGGGACACTCGTTATTGACTTCTTTAGCTGGAAGCAAGTTTGAAAAAGTTATGACATTGA
TTAGGTACACTGCTTTGGATGCTCTGCGATTAATCTCTCTTGAGGATGATTACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTAATAAACTTGTTGCT
GCTCAAGGAATGAATGGAGATGATAATGCCAGGAAGCGTCAACATGAAAAATTAAAGGACGTGCTTCAGAAGATGGAAGTTTTGATACGGAAGTTGCAGACTAAAATTGA
TCCAAGGATCGGTTTCAAAATCTTGATTGCTTCCTTGCTGGTAGAAAATGTGAAGCAAGATGATGCACTATCTGACATGAGTGATATCTTGGTAGAGCTAAAGGAAATGG
CTGTTGACATGGGTTGTGAAATTGACAGGCAGAACCATGCTCTGGATCGCGCTTCTTGA
Protein sequenceShow/hide protein sequence
MEPRFQAAFRAMEALEKGAIANPDEGRMIHNTLDAVCNFAEMISSVVSVLLVAKGHSLLTSLAGSKFEKVMTLIRYTALDALRLISLEDDYFHCENCNGELVAESNKLVA
AQGMNGDDNARKRQHEKLKDVLQKMEVLIRKLQTKIDPRIGFKILIASLLVENVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALDRAS