; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009073 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009073
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold2:28514963..28519959
RNA-Seq ExpressionSpg009073
SyntenySpg009073
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-2960.28Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD
        E +N   SY    EEVDNS + +Q+ SVFDRIKP TTR  VFQR+SM   EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD

Query:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK
        + + K F + + D K+ S VPSRMKRK  V IN EGSL  K
Subjt:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-3064.06Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ K F + + D
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK  V IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]9.5e-3063.28Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ S+FDRIKP TTR  VFQR+SM   EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ K F + +GD
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK  V IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2960.28Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD
        E +N   SY    EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD

Query:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK
        +L+ K F + + D K+ S VPSR+KRK  + IN EGSL  K
Subjt:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2963.28Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EE+NQC  ST TR SAF+RLS+STSKK R STS FDR+K+ +DQ QR+M +L+ K F + + D
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK FV IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.3e-2960.28Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD
        E +N   SY    EEVDNS + +Q+ SVFDRIKP TTR  VFQR+SM   EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD

Query:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK
        + + K F + + D K+ S VPSRMKRK  V IN EGSL  K
Subjt:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK

A0A5A7TQ06 Retrotransposon gag protein4.6e-3064.06Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ K F + + D
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK  V IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

A0A5A7U974 Retrotransposon gag protein6.0e-3060.28Show/hide
Query:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD
        E +N   SY    EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+T+DQ QR+M 
Subjt:  EKENFATSYCIDVEEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMD

Query:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK
        +L+ K F + + D K+ S VPSR+KRK  + IN EGSL  K
Subjt:  NLEVKLFDKISGDKKLQSIVPSRMKRKFFVLINIEGSLKRK

A0A5D3BBF9 Gag protease polyprotein4.6e-3063.28Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ S+FDRIKP TTR  VFQR+SM   EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+T+DQ QR+M +L+ K F + +GD
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK  V IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

A0A5D3BLW3 Retrotransposon gag protein6.0e-3063.28Show/hide
Query:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD
        EEVDNS + +Q+ SVFDRIKP TTR SVFQR+SM   EE+NQC  ST TR SAF+RLS+STSKK R STS FDR+K+ +DQ QR+M +L+ K F + + D
Subjt:  EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGD

Query:  KKLQSIVPSRMKRKFFVLINIEGSLKRK
         K+ S VPSRMKRK FV IN EGSL  K
Subjt:  KKLQSIVPSRMKRKFFVLINIEGSLKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGGCCCACTTTGTATTAAGTACAAACGATGAGATCCTAAATCGTTCATGTGGAGACATGCGAGTGGGGGCGTCTTATGCAATGAAACATGCATGCTTTAGGAG
TAAAATTGATAGAGTTAAGTGCTTTCGACTTCAGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGC
AGGAGCACATTAACGCCTTGATGAAGGCGATTAAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTA
GAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAAGATTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGAC
AGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGGCGATCTTCAACATCTGTCTTTGATC
GCCTCAAAGTAACAGACGATCAATCTCAAAGAAAGATGGATAACTTAGAGGTGAAATTGTTCGATAAAATAAGCGGTGACAAAAAGCTTCAAAGTATTGTCCCGTCACGT
ATGAAAAGGAAGTTCTTTGTTCTCATAAATATAGAAGGTTCCTTGAAGAGAAAGACTCTTCAAGACTTCTTGAAGACTGAGACTAGAAGACTTCAACAATTCTTGAAGAC
CAAAGACTCTTCAAGACTTCAAGACCCCCAAGACTTCTTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAACAATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGGCCCACTTTGTATTAAGTACAAACGATGAGATCCTAAATCGTTCATGTGGAGACATGCGAGTGGGGGCGTCTTATGCAATGAAACATGCATGCTTTAGGAG
TAAAATTGATAGAGTTAAGTGCTTTCGACTTCAGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGC
AGGAGCACATTAACGCCTTGATGAAGGCGATTAAAGAAAGAGATTCTCAAATTGAGCACCTAAAGAGTCAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTA
GAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAAGATTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGAC
AGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGGCGATCTTCAACATCTGTCTTTGATC
GCCTCAAAGTAACAGACGATCAATCTCAAAGAAAGATGGATAACTTAGAGGTGAAATTGTTCGATAAAATAAGCGGTGACAAAAAGCTTCAAAGTATTGTCCCGTCACGT
ATGAAAAGGAAGTTCTTTGTTCTCATAAATATAGAAGGTTCCTTGAAGAGAAAGACTCTTCAAGACTTCTTGAAGACTGAGACTAGAAGACTTCAACAATTCTTGAAGAC
CAAAGACTCTTCAAGACTTCAAGACCCCCAAGACTTCTTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAACAATCCTTAA
Protein sequenceShow/hide protein sequence
MDAAHFVLSTNDEILNRSCGDMRVGASYAMKHACFRSKIDRVKCFRLQFEPDSDVVTVMMTETRTMEERMVEMQEHINALMKAIKERDSQIEHLKSQEKENFATSYCIDV
EEVDNSEKGEQKISVFDRIKPSTTRPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKRRSSTSVFDRLKVTDDQSQRKMDNLEVKLFDKISGDKKLQSIVPSR
MKRKFFVLINIEGSLKRKTLQDFLKTETRRLQQFLKTKDSSRLQDPQDFLKTEDPSRLEDFNNP