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Spg009082 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009082
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold2:28309677..28314646
RNA-Seq ExpressionSpg009082
SyntenySpg009082
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.4e-1040Show/hide
Query:  TRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-------------ESRL----HFFRPRGNRSSLQTRKLAKT--------
        +R+ +GFL FS       V+K NQKLYLI+  REPRI   C+        W             E R+    +   PRGNR SLQT +L KT        
Subjt:  TRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-------------ESRL----HFFRPRGNRSSLQTRKLAKT--------

Query:  ---------VEIELPVPDTLLTFAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLA
                 VEIELPV DTL   AESS S+S S         + EDDV WLH +FR K A
Subjt:  ---------VEIELPVPDTLLTFAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLA

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.5e-1135.48Show/hide
Query:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS
        EK  AKPAIAE+G N      LFGLSY E  +   E TR      + SK  G    +  L ++                              PRGNR +
Subjt:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS

Query:  LQTRKLAKTVEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA
        L T KL KTVEIELPVPDTL T AESS+S+SS+  +                          EG    +  DD+ WLHA+F  K A
Subjt:  LQTRKLAKTVEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-0735.87Show/hide
Query:  LFGLSYTEGTKRIFEQTRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSSLQTRKLAKT---------
        LF LSY EGTK     ++   GFL FS       ++K NQKLYL+    E RI  +              L    PRGNR SLQTR+L KT         
Subjt:  LFGLSYTEGTKRIFEQTRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSSLQTRKLAKT---------

Query:  ------VEIELPVPDTLLTFAESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTK
              V IELPVPD L T AESS S+SS+  +                              G    +  DDV WLHA+FR K
Subjt:  ------VEIELPVPDTLLTFAESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTK

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.7e-0936.87Show/hide
Query:  GFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-----------ESRL----HFFRPRGNRSSLQTRKLAKT---------------
        GFL FS       V+K NQKLYLI+  REPRI   C+        W           E R+    +   PRGNRSSLQT +L KT               
Subjt:  GFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-----------ESRL----HFFRPRGNRSSLQTRKLAKT---------------

Query:  --VEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA
          VEIELPVPDTL T AES  S+SS+  +                          EG    +  DDV WLH +FR K+A
Subjt:  --VEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]1.8e-0841.59Show/hide
Query:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS
        EK  AKP IAE+G N      LF LSY EGTKRIFEQTRRISG L   ++SG  ++  +           + G+    V   I + +      P GNR S
Subjt:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS

Query:  LQTRKLAKTVEIE
        LQ  +L KT+ I+
Subjt:  LQTRKLAKTVEIE

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein3.1e-1135.48Show/hide
Query:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS
        EK  AKPAIAE+G N      LFGLSY E  +   E TR      + SK  G    +  L ++                              PRGNR +
Subjt:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS

Query:  LQTRKLAKTVEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA
        L T KL KTVEIELPVPDTL T AESS+S+SS+  +                          EG    +  DD+ WLHA+F  K A
Subjt:  LQTRKLAKTVEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA

A0A5A7UT17 CCHC-type domain-containing protein7.2e-0835.87Show/hide
Query:  LFGLSYTEGTKRIFEQTRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSSLQTRKLAKT---------
        LF LSY EGTK     ++   GFL FS       ++K NQKLYL+    E RI  +              L    PRGNR SLQTR+L KT         
Subjt:  LFGLSYTEGTKRIFEQTRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSSLQTRKLAKT---------

Query:  ------VEIELPVPDTLLTFAESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTK
              V IELPVPD L T AESS S+SS+  +                              G    +  DDV WLHA+FR K
Subjt:  ------VEIELPVPDTLLTFAESSRSSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTK

A0A5A7VIY9 Uncharacterized protein1.3e-0936.87Show/hide
Query:  GFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-----------ESRL----HFFRPRGNRSSLQTRKLAKT---------------
        GFL FS       V+K NQKLYLI+  REPRI   C+        W           E R+    +   PRGNRSSLQT +L KT               
Subjt:  GFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-----------ESRL----HFFRPRGNRSSLQTRKLAKT---------------

Query:  --VEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA
          VEIELPVPDTL T AES  S+SS+  +                          EG    +  DDV WLH +FR K+A
Subjt:  --VEIELPVPDTLLTFAESSRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLA

A0A5D3BC77 CCHC-type domain-containing protein8.6e-0941.59Show/hide
Query:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS
        EK  AKP IAE+G N      LF LSY EGTKRIFEQTRRISG L   ++SG  ++  +           + G+    V   I + +      P GNR S
Subjt:  EKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSS

Query:  LQTRKLAKTVEIE
        LQ  +L KT+ I+
Subjt:  LQTRKLAKTVEIE

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.5e-1040Show/hide
Query:  TRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-------------ESRL----HFFRPRGNRSSLQTRKLAKT--------
        +R+ +GFL FS       V+K NQKLYLI+  REPRI   C+        W             E R+    +   PRGNR SLQT +L KT        
Subjt:  TRRISGFLWFSKHSG---VYKLNQKLYLIKGSREPRICGVCVRGVSGQIGW-------------ESRL----HFFRPRGNRSSLQTRKLAKT--------

Query:  ---------VEIELPVPDTLLTFAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLA
                 VEIELPV DTL   AESS S+S S         + EDDV WLH +FR K A
Subjt:  ---------VEIELPVPDTLLTFAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACCGGCCTCCGCCTACCCCCACTGACTAGCCTCCGTCGATCGACCGCTACCGTCGACCTCCGACTACCTGGCGCTGTCGACCAACCACCATCGTCGACCTTTGA
CTACCGGTCGCCGTCGACCCCTGCTGACCAGCCTCCGCCAACTGACCACTACCGTCAACCTCAGACTACCAGGCGCCGCCGACCAGCCACTACCATAAATGAAAAGTATC
AAAAGCTGGAAATATGGACAGTAGCCAAATACTATGGGTTTTTCTATTTACTCAATCCTTCTAGAGTTCGCTTAGACACTCCACTCTCTCGCTTTTACAAGTGGGAATGG
GTGAAAATCCCTACAAACCCTAAGGAAAAAGCTCAAGCAAAGCCAGCCATAGCAGAAGCTGGGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGA
AGGAACTAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTCCAAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGTA
GCAGAGAACCTCGAATCTGTGGTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCTCGTCTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAG
ACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCTAACGTTTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCA
ACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGAGCTTAGGGCTGCTGAGATTGCAGCCAGACTTGCTGCGGCCATTT
CTTCCGCGGCTCTATCTCGCACCTCTTTGTCGGCACACTCCTTTTCTTTTGCCGCTTCTTATTCTTCGGCGGCCTTGCGGGCAACTTCTTCTGCCGCAGCTTTGGCTTCA
GCTTCTCTCTGGCGCAGGGCTTCGCCTTCTGCACCCAACTCCCCTAGCAGGGAGTTCCATGCAGCCTCCTCACGCTCAGAAAACTGCAGTGAGGGAGGGTTTGCAGAGGA
TGAAGATGGAAAAGGGTCGGAAACAGATGCGTGTATGGAGGAAGAAGAAGGGGATGGGTCAGAGGCGAGGGTGGCTGAAGAGTTCAGAGGTGGAAGGAGAAGTAGGGAAG
GAAATGGGGATGGAAATGGGGTGAGGTTTCATGGGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAACCGGCCTCCGCCTACCCCCACTGACTAGCCTCCGTCGATCGACCGCTACCGTCGACCTCCGACTACCTGGCGCTGTCGACCAACCACCATCGTCGACCTTTGA
CTACCGGTCGCCGTCGACCCCTGCTGACCAGCCTCCGCCAACTGACCACTACCGTCAACCTCAGACTACCAGGCGCCGCCGACCAGCCACTACCATAAATGAAAAGTATC
AAAAGCTGGAAATATGGACAGTAGCCAAATACTATGGGTTTTTCTATTTACTCAATCCTTCTAGAGTTCGCTTAGACACTCCACTCTCTCGCTTTTACAAGTGGGAATGG
GTGAAAATCCCTACAAACCCTAAGGAAAAAGCTCAAGCAAAGCCAGCCATAGCAGAAGCTGGGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGA
AGGAACTAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTCCAAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGTA
GCAGAGAACCTCGAATCTGTGGTGTCTGTGTTCGGGGCGTTTCTGGGCAAATTGGTTGGGAATCTCGTCTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAG
ACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCTAACGTTTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCA
ACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAGAGCTTAGGGCTGCTGAGATTGCAGCCAGACTTGCTGCGGCCATTT
CTTCCGCGGCTCTATCTCGCACCTCTTTGTCGGCACACTCCTTTTCTTTTGCCGCTTCTTATTCTTCGGCGGCCTTGCGGGCAACTTCTTCTGCCGCAGCTTTGGCTTCA
GCTTCTCTCTGGCGCAGGGCTTCGCCTTCTGCACCCAACTCCCCTAGCAGGGAGTTCCATGCAGCCTCCTCACGCTCAGAAAACTGCAGTGAGGGAGGGTTTGCAGAGGA
TGAAGATGGAAAAGGGTCGGAAACAGATGCGTGTATGGAGGAAGAAGAAGGGGATGGGTCAGAGGCGAGGGTGGCTGAAGAGTTCAGAGGTGGAAGGAGAAGTAGGGAAG
GAAATGGGGATGGAAATGGGGTGAGGTTTCATGGGGGTTGA
Protein sequenceShow/hide protein sequence
MITGLRLPPLTSLRRSTATVDLRLPGAVDQPPSSTFDYRSPSTPADQPPPTDHYRQPQTTRRRRPATTINEKYQKLEIWTVAKYYGFFYLLNPSRVRLDTPLSRFYKWEW
VKIPTNPKEKAQAKPAIAEAGFNMPTSGFLFGLSYTEGTKRIFEQTRRISGFLWFSKHSGVYKLNQKLYLIKGSREPRICGVCVRGVSGQIGWESRLHFFRPRGNRSSLQ
TRKLAKTVEIELPVPDTLLTFAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAELRAAEIAARLAAAISSAALSRTSLSAHSFSFAASYSSAALRATSSAAALAS
ASLWRRASPSAPNSPSREFHAASSRSENCSEGGFAEDEDGKGSETDACMEEEEGDGSEARVAEEFRGGRRSREGNGDGNGVRFHGG