; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009084 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009084
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:28550076..28552395
RNA-Seq ExpressionSpg009084
SyntenySpg009084
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-3050.79Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG--------------------------PRGSRSSLQTGELDKT---------------VEI
        TVNLWF +    +    +STGFSSK GG LVFSD LSIL                           PRG+R SLQT ELDKT               V I
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG--------------------------PRGSRSSLQTGELDKT---------------VEI

Query:  ELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
        ELPVPD LPTSAESS S+SS                 F NQVMS LH V    FN+SVGS+GIVR DDVCWLHAVFRAK  GGPGGGVT
Subjt:  ELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-3051.69Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS
        TGFSSK GG LVFSD LSIL                         RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS

Query:  ----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVTYANSLHRMP
                        YF NQVMS LH V    F++ VGS+GIVR DDVCWLHAVFRAK  GGPGGGVT   S H +P
Subjt:  ----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVTYANSLHRMP

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3457.14Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSIL-------------------GPRGSRSSLQTGELDKT-----------------VEIELPVP
        TVNLWF +    ++   +STGFSSK G  LVFSD LSIL                    PRG++ SLQTGELDKT                 VEIEL VP
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSIL-------------------GPRGSRSSLQTGELDKT-----------------VEIELPVP

Query:  DTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
        DTLPTSAES  S+SSYF NQVMSGLH V    FN+SVGS+GIVR DDVC LH VFRAK AGGPGGGVT
Subjt:  DTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.4e-4143Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG----
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                    STGFSSK  G LVFSD LSIL     
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG----

Query:  -------------------PRGSRSSLQTGELDK------------------------------------------------------------------
                           PRG+RSSLQTG+LDK                                                                  
Subjt:  -------------------PRGSRSSLQTGELDK------------------------------------------------------------------

Query:  -------------TVEIELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
                     ++EIEL VPDTLPTSAESS S+SS          Y P+ V +        R    V S+GIVR++DVCWLHAVFRAK+AGG GGGVT
Subjt:  -------------TVEIELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.8e-3456.32Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSI-----------LGPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS
        TVNLWF +    +    +STGFSSK GG LV SD LSI           LGPRG+R SLQTGELDKTV                IELPVPDTLPTSAESS
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSI-----------LGPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS

Query:  RSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
         S+SS                 F NQVMS LH V    FN+SVGS+GIVR DDVCWLHAVFRAK  GGPGGGVT
Subjt:  RSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein7.2e-3150.79Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG--------------------------PRGSRSSLQTGELDKT---------------VEI
        TVNLWF +    +    +STGFSSK GG LVFSD LSIL                           PRG+R SLQT ELDKT               V I
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG--------------------------PRGSRSSLQTGELDKT---------------VEI

Query:  ELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
        ELPVPD LPTSAESS S+SS                 F NQVMS LH V    FN+SVGS+GIVR DDVCWLHAVFRAK  GGPGGGVT
Subjt:  ELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase2.1e-3051.69Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS
        TGFSSK GG LVFSD LSIL                         RG+RSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS
Subjt:  TGFSSKAGGSLVFSDVLSILGP-----------------------RGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS

Query:  ----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVTYANSLHRMP
                        YF NQVMS LH V    F++ VGS+GIVR DDVCWLHAVFRAK  GGPGGGVT   S H +P
Subjt:  ----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVTYANSLHRMP

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein6.3e-3557.14Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSIL-------------------GPRGSRSSLQTGELDKT-----------------VEIELPVP
        TVNLWF +    ++   +STGFSSK G  LVFSD LSIL                    PRG++ SLQTGELDKT                 VEIEL VP
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSIL-------------------GPRGSRSSLQTGELDKT-----------------VEIELPVP

Query:  DTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
        DTLPTSAES  S+SSYF NQVMSGLH V    FN+SVGS+GIVR DDVC LH VFRAK AGGPGGGVT
Subjt:  DTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CAC6 Uncharacterized protein1.2e-4143Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG----
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                    STGFSSK  G LVFSD LSIL     
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILG----

Query:  -------------------PRGSRSSLQTGELDK------------------------------------------------------------------
                           PRG+RSSLQTG+LDK                                                                  
Subjt:  -------------------PRGSRSSLQTGELDK------------------------------------------------------------------

Query:  -------------TVEIELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
                     ++EIEL VPDTLPTSAESS S+SS          Y P+ V +        R    V S+GIVR++DVCWLHAVFRAK+AGG GGGVT
Subjt:  -------------TVEIELPVPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.8e-3456.32Show/hide
Query:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSI-----------LGPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS
        TVNLWF +    +    +STGFSSK GG LV SD LSI           LGPRG+R SLQTGELDKTV                IELPVPDTLPTSAESS
Subjt:  TVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSI-----------LGPRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS

Query:  RSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT
         S+SS                 F NQVMS LH V    FN+SVGS+GIVR DDVCWLHAVFRAK  GGPGGGVT
Subjt:  RSSSS----------------YFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCAACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGCATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGA
AGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTA
CTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACCTTTCAGTAGGGTCATCAGGGATCGTTAGAGATGACGATGTCTGTTGGCTTCACG
CCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATATGCAAACTCATTGCATAGGATGCCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCA
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCAACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGCATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGA
AGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTTA
CTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACCTTTCAGTAGGGTCATCAGGGATCGTTAGAGATGACGATGTCTGTTGGCTTCACG
CCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATATGCAAACTCATTGCATAGGATGCCCCCACTCGCATGTCTCCTACACGAACGCGTTGGATCA
TAG
Protein sequenceShow/hide protein sequence
MDSTKPTTNNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRHQESTGFSSKAGGSLVFSDVLSILGPRG
SRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNLSVGSSGIVRDDDVCWLHAVFRAKLAGGPGGGVTYANSLHRMPPLACLLHERVGS