; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009085 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009085
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:28365619..28372201
RNA-Seq ExpressionSpg009085
SyntenySpg009085
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1250.5Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   + +        EDDV WL  +FR + A GPGGG
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG

Query:  L
        +
Subjt:  L

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-1052.08Show/hide
Query:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        +SI YMTEILS RLYG +CTQ                 VEIEL VPDTLPTSAES RS+S S         +  DDV WL  IFR + A GPGG L
Subjt:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]4.0e-1050Show/hide
Query:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        +SIDY+TEILS RLYGT+CTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WL  +FR +   GPG G+
Subjt:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.1e-1051.65Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        MTEILS RLYGT+CTQ                 VEIELPV DTLPTSAESS S+S S         +  DDV WL  +FR + A+GPGGG+
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1250.5Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   + +        EDDV WL  +FR + A GPGGG
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein1.9e-1050Show/hide
Query:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        +SIDY+TEILS RLYGT+CTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WL  +FR +   GPG G+
Subjt:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

A0A5A7VMG9 Reverse transcriptase1.2e-1250.5Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   + +        EDDV WL  +FR + A GPGGG
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG

Query:  L
        +
Subjt:  L

A0A5D3BP54 Gag/pol protein1.5e-1052.08Show/hide
Query:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        +SI YMTEILS RLYG +CTQ                 VEIEL VPDTLPTSAES RS+S S         +  DDV WL  IFR + A GPGG L
Subjt:  ISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

A0A5D3CU23 Retrotrans_gag domain-containing protein1.5e-1051.65Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL
        MTEILS RLYGT+CTQ                 VEIELPV DTLPTSAESS S+S S         +  DDV WL  +FR + A+GPGGG+
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGL

A0A5D3DX39 Reverse transcriptase1.2e-1250.5Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS S+SS+    + E   + +        EDDV WL  +FR + A GPGGG
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRSSSSS---TFQEGQRISL-------EEDDVRWLRPIFRTELANGPGGG

Query:  L
        +
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCCGAGATGCGGCCGCAACTGGGCTTTCCGACAGAATACCGAGATTCGCAGGATCTTCACAGAATCATCTGAAAATCCCCAATCCAGCATCAAATCTTCAAGGAT
CGCGGATTATTACTGTAAACCCGAGACTTCCCTTGGATCATTTCCTCTTGTCATCTATTGTGGAAAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTAGTTTTCGCT
TGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACA
CAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGATATCGTTAGAGGA
GGACGATGTTCGTTGGCTTCGCCCCATCTTTCGGACTGAGCTAGCAAATGGTCCGGGAGGGGGTTTAAATAATATATTGTTGAGCGACTTGAGGGAGCAAAATCTGCGCT
ACAGCAAAGCAGGGAGCAAAACTGCCACGTCATACCTCGTTATCCATTTTAATGAGCCGAAGTTTGTTGAGCTATTCTCGGATTTAAGAAGCAAGGAGAGCCATCCACGT
GTACAATTTCACCTAATTAGGGATTGCTATCACTCTATAAAAGGAGGAGCCGTCTCAAGTCAAATTCATTCCATTCTTGAGGAGGAACATTCCACTCTTGGAAAGTTCAT
TTCCATTATTGGGAACCGAATAGAGGAGAAAGATTGGAGACCTGCACGAAGACCATCAATTACGGAGTTGATCAAGGGAATTAGTATTTTCTTGAATTATTTTGTAATTA
TGGATGCATTTACTCAGATTGTAACCTTGGACTGGTTAAGCTTAATTAGATCAAGGTATTCTGATCTCCAGAAACCTTTTGCTAGAGCATTTCTTCTAGCCTGGTCTTTG
CTGCGACAAGAAGATTCTGAGCAGTCCTTGGTTTTGCATAATGCTCAGAATGTATTGCTGAGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAGCAAGGAGTAAAAC
TGCCACGTCACAGCTCGTTAGCCAATTTAATGAACTGAATTCAGTTAAGCTATTCTCGGATTTAAGGAGCAAGGCGAGCCATCCACTTGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCCGAGATGCGGCCGCAACTGGGCTTTCCGACAGAATACCGAGATTCGCAGGATCTTCACAGAATCATCTGAAAATCCCCAATCCAGCATCAAATCTTCAAGGAT
CGCGGATTATTACTGTAAACCCGAGACTTCCCTTGGATCATTTCCTCTTGTCATCTATTGTGGAAAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTAGTTTTCGCT
TGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACA
CAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGATATCGTTAGAGGA
GGACGATGTTCGTTGGCTTCGCCCCATCTTTCGGACTGAGCTAGCAAATGGTCCGGGAGGGGGTTTAAATAATATATTGTTGAGCGACTTGAGGGAGCAAAATCTGCGCT
ACAGCAAAGCAGGGAGCAAAACTGCCACGTCATACCTCGTTATCCATTTTAATGAGCCGAAGTTTGTTGAGCTATTCTCGGATTTAAGAAGCAAGGAGAGCCATCCACGT
GTACAATTTCACCTAATTAGGGATTGCTATCACTCTATAAAAGGAGGAGCCGTCTCAAGTCAAATTCATTCCATTCTTGAGGAGGAACATTCCACTCTTGGAAAGTTCAT
TTCCATTATTGGGAACCGAATAGAGGAGAAAGATTGGAGACCTGCACGAAGACCATCAATTACGGAGTTGATCAAGGGAATTAGTATTTTCTTGAATTATTTTGTAATTA
TGGATGCATTTACTCAGATTGTAACCTTGGACTGGTTAAGCTTAATTAGATCAAGGTATTCTGATCTCCAGAAACCTTTTGCTAGAGCATTTCTTCTAGCCTGGTCTTTG
CTGCGACAAGAAGATTCTGAGCAGTCCTTGGTTTTGCATAATGCTCAGAATGTATTGCTGAGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAGCAAGGAGTAAAAC
TGCCACGTCACAGCTCGTTAGCCAATTTAATGAACTGAATTCAGTTAAGCTATTCTCGGATTTAAGGAGCAAGGCGAGCCATCCACTTGTCTAG
Protein sequenceShow/hide protein sequence
MRPRCGRNWAFRQNTEIRRIFTESSENPQSSIKSSRIADYYCKPETSLGSFPLVIYCGKHRIFEQTRRISSFRLFFEHSGVYKLNQKLYLISIDYMTEILSPRLYGTMCT
QVEIELPVPDTLPTSAESSRSSSSSTFQEGQRISLEEDDVRWLRPIFRTELANGPGGGLNNILLSDLREQNLRYSKAGSKTATSYLVIHFNEPKFVELFSDLRSKESHPR
VQFHLIRDCYHSIKGGAVSSQIHSILEEEHSTLGKFISIIGNRIEEKDWRPARRPSITELIKGISIFLNYFVIMDAFTQIVTLDWLSLIRSRYSDLQKPFARAFLLAWSL
LRQEDSEQSLVLHNAQNVLLSDLREQILCCSKARSKTATSQLVSQFNELNSVKLFSDLRSKASHPLV