; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009088 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009088
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold2:28315288..28321314
RNA-Seq ExpressionSpg009088
SyntenySpg009088
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-1147.11Show/hide
Query:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS
        PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSAESSRS SS+ ++                     QG  + S
Subjt:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS

Query:  ----KEDDVYWLHAISLTKLA
            + DDV WLHAI   K A
Subjt:  ----KEDDVYWLHAISLTKLA

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.7e-0959.46Show/hide
Query:  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST
        +K+  R +  S   G      I  L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Subjt:  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]8.5e-0644.35Show/hide
Query:  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------------VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSS
        L  LSVLRDND VVSAG            RAPL +R   RW  W                     VEIEL VPDTLPTSAESS S S S+ I +G     
Subjt:  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------------VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSS

Query:  KEDDVYWLHAISLTK
          DDV WLH +   K
Subjt:  KEDDVYWLHAISLTK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-1147.11Show/hide
Query:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS
        PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSAESSRS SS+ ++                     QG  + S
Subjt:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS

Query:  ----KEDDVYWLHAISLTKLA
            + DDV WLHAI   K A
Subjt:  ----KEDDVYWLHAISLTKLA

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]6.3e-0978Show/hide
Query:  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST
        L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Subjt:  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.5e-1147.11Show/hide
Query:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS
        PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSAESSRS SS+ ++                     QG  + S
Subjt:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS

Query:  ----KEDDVYWLHAISLTKLA
            + DDV WLHAI   K A
Subjt:  ----KEDDVYWLHAISLTKLA

A0A5A7TPS6 Retrotrans_gag domain-containing protein8.0e-1059.46Show/hide
Query:  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST
        +K+  R +  S   G      I  L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Subjt:  IKVTKRKSAESANQGTSQDCYI-PLLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST

A0A5A7VGQ5 Uncharacterized protein4.1e-0644.35Show/hide
Query:  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------------VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSS
        L  LSVLRDND VVSAG            RAPL +R   RW  W                     VEIEL VPDTLPTSAESS S S S+ I +G     
Subjt:  LLALSVLRDNDVVVSAG------------RAPLRQR---RWECW---------------------VEIELLVPDTLPTSAESSRSTS-SSMIQQGQQVSS

Query:  KEDDVYWLHAISLTK
          DDV WLH +   K
Subjt:  KEDDVYWLHAISLTK

A0A5D3BTP3 Reverse transcriptase1.5e-1147.11Show/hide
Query:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS
        PL  LSVL DND VVSAG+APLRQRRWEC                VEIEL VPD LPTSAESSRS SS+ ++                     QG  + S
Subjt:  PLLALSVLRDNDVVVSAGRAPLRQRRWEC---------------WVEIELLVPDTLPTSAESSRSTSSSMIQ---------------------QGQQVSS

Query:  ----KEDDVYWLHAISLTKLA
            + DDV WLHAI   K A
Subjt:  ----KEDDVYWLHAISLTKLA

A0A5D3DV36 Retrotrans_gag domain-containing protein3.1e-0978Show/hide
Query:  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST
        L  LSVL DND VVSAGRA LRQRRWEC VEIEL VPDTLPTSA+ S  T
Subjt:  LLALSVLRDNDVVVSAGRAPLRQRRWECWVEIELLVPDTLPTSAESSRST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGCGGGTCGAGAGTCTGCCAGATATCCATTACGCTCAGCTACTCTTCTCCTTGCTTCTTGGATATTTGAGCTTAGTGTAAACCCGAGACTTCCCTTGGATTATTTTCT
CTTGTCATCTATAGTGGAAGTTGAATTAAAGTTGTTGTTGTACATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTGGTTCCATTGTTTGGATTAAAGTTACCA
AGAGGAAATCGGCCGAGTCTGCAAACCAGGGAACTAGCCAAGACTGTTATATTCCGTTGTTGGCGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGACGG
GCCCCACTACGACAAAGACGATGGGAGTGCTGGGTAGAGATCGAGCTCTTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCGACTTCCAGTTCAATGAT
TCAGCAGGGTCAACAGGTATCGTCAAAGGAGGACGATGTCTATTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGACGTTGAGTCAGTTCAGATGGAACTGGCAGAGT
ATGGTCCAAGTATGGATAAGAGTGAGTCCATCTACCCTGCGTTGGTATCCTTTCTTCTGACTTCTCTTAGTCCTTGCTCTCTGGTCTCGCCTCTCTCCTCCCTCCCTTCT
CTTGTGCAGGTGGATGCTTCTTATAGGCTGAGGAGGCTGACTTCTCCGAGAAATTGGGGCCCCACTGCTTCGTTTATCATCTGCCACAGCTCTGAGAAAATGAGCGCTGT
CTCCATGTCAAGGGTTAGGACAGACGTAGTATTGCGTGCGCTGGCAGATGGGCTAGTTTGTGGCTGGGAGCTCGGCGCAGAAGGGGCCGTCGGTCAGGTGATGGCTGTGG
CAGCAAGGATTCTTGGTTCAAGGCGTAGACAGAAGTTTCCTGCGCCGAAGGGGCTTGTTGTGCGTTCCTTGCTGCAGCATGAGGATTGCGGCCTGCGGTCTGTTTGCGCC
TCTTCTTCTTTGGTGCTTCAAGCACAGGGGCATTTTTCGGTGGTCATGGGAGCAGGGGCTTGTCACCGAGCCTCTGCCTGCAGACGCAGATTGTGTGTGCGCGTGATGCG
CACCCACCATTGCTCATCAAAAGTCTACCGCATAGGTCAGATTTCTTCATTCGGAGAGGCCAGTAGACCCGTCATGCGGCAGAGTCGCGTCACAAGCCATGGGCAAAACA
TTGCGCCTTTGGATTTGGAAGCGGTTTGGCGCAAAGATTCAGATAAAATGCGGCCCAGGTCAAGAGGAATCCCGCGCAATATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ACAGCGGGTCGAGAGTCTGCCAGATATCCATTACGCTCAGCTACTCTTCTCCTTGCTTCTTGGATATTTGAGCTTAGTGTAAACCCGAGACTTCCCTTGGATTATTTTCT
CTTGTCATCTATAGTGGAAGTTGAATTAAAGTTGTTGTTGTACATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTGGTTCCATTGTTTGGATTAAAGTTACCA
AGAGGAAATCGGCCGAGTCTGCAAACCAGGGAACTAGCCAAGACTGTTATATTCCGTTGTTGGCGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTGCTGGACGG
GCCCCACTACGACAAAGACGATGGGAGTGCTGGGTAGAGATCGAGCTCTTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCGACTTCCAGTTCAATGAT
TCAGCAGGGTCAACAGGTATCGTCAAAGGAGGACGATGTCTATTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGACGTTGAGTCAGTTCAGATGGAACTGGCAGAGT
ATGGTCCAAGTATGGATAAGAGTGAGTCCATCTACCCTGCGTTGGTATCCTTTCTTCTGACTTCTCTTAGTCCTTGCTCTCTGGTCTCGCCTCTCTCCTCCCTCCCTTCT
CTTGTGCAGGTGGATGCTTCTTATAGGCTGAGGAGGCTGACTTCTCCGAGAAATTGGGGCCCCACTGCTTCGTTTATCATCTGCCACAGCTCTGAGAAAATGAGCGCTGT
CTCCATGTCAAGGGTTAGGACAGACGTAGTATTGCGTGCGCTGGCAGATGGGCTAGTTTGTGGCTGGGAGCTCGGCGCAGAAGGGGCCGTCGGTCAGGTGATGGCTGTGG
CAGCAAGGATTCTTGGTTCAAGGCGTAGACAGAAGTTTCCTGCGCCGAAGGGGCTTGTTGTGCGTTCCTTGCTGCAGCATGAGGATTGCGGCCTGCGGTCTGTTTGCGCC
TCTTCTTCTTTGGTGCTTCAAGCACAGGGGCATTTTTCGGTGGTCATGGGAGCAGGGGCTTGTCACCGAGCCTCTGCCTGCAGACGCAGATTGTGTGTGCGCGTGATGCG
CACCCACCATTGCTCATCAAAAGTCTACCGCATAGGTCAGATTTCTTCATTCGGAGAGGCCAGTAGACCCGTCATGCGGCAGAGTCGCGTCACAAGCCATGGGCAAAACA
TTGCGCCTTTGGATTTGGAAGCGGTTTGGCGCAAAGATTCAGATAAAATGCGGCCCAGGTCAAGAGGAATCCCGCGCAATATGCAATAG
Protein sequenceShow/hide protein sequence
TAGRESARYPLRSATLLLASWIFELSVNPRLPLDYFLLSSIVEVELKLLLYIVEENGKALWFHCGSIVWIKVTKRKSAESANQGTSQDCYIPLLALSVLRDNDVVVSAGR
APLRQRRWECWVEIELLVPDTLPTSAESSRSTSSSMIQQGQQVSSKEDDVYWLHAISLTKLADVESVQMELAEYGPSMDKSESIYPALVSFLLTSLSPCSLVSPLSSLPS
LVQVDASYRLRRLTSPRNWGPTASFIICHSSEKMSAVSMSRVRTDVVLRALADGLVCGWELGAEGAVGQVMAVAARILGSRRRQKFPAPKGLVVRSLLQHEDCGLRSVCA
SSSLVLQAQGHFSVVMGAGACHRASACRRRLCVRVMRTHHCSSKVYRIGQISSFGEASRPVMRQSRVTSHGQNIAPLDLEAVWRKDSDKMRPRSRGIPRNMQ