; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009099 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009099
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold2:28119493..28124336
RNA-Seq ExpressionSpg009099
SyntenySpg009099
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032649.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.7e-2457.85Show/hide
Query:  RSKLIYSSNAAPE---SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE
        +S ++   N A +   S  +  + E   P++ SV++  + T + RM ELE+KVNMLMKVVEERDYEIA LKNHIESHD  ESS     KN DKGK VMQE
Subjt:  RSKLIYSSNAAPE---SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE

Query:  NQPQHSTSIVSLSVQQLQDMI
        +QPQ+STSI SLSVQQLQ+MI
Subjt:  NQPQHSTSIVSLSVQQLQDMI

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-2350.65Show/hide
Query:  EAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQLQD
        E  + E + P++ SV++  + T + RM+ELE+KVNMLMKVVEERDYEIASLKNHIES DA ESS     KN DKGK VMQE+QPQ+STSI SLSVQQLQ+
Subjt:  EAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQLQD

Query:  MIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ
        MI +        P+    L +K Y K+      P+  + P     F    +P Q
Subjt:  MIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ

KAA0056609.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-2355.37Show/hide
Query:  RSKLIYSSNA---APESKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE
        +S +I+  N       S  E  + E S P++ SV++A + T +++M ELE+K+NMLMK +E +DYEIASLKNHIES DATESS T  AKN  KGK ++QE
Subjt:  RSKLIYSSNA---APESKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE

Query:  NQPQHSTSIVSLSVQQLQDMI
        +QPQ+STSI SLS+QQLQ+MI
Subjt:  NQPQHSTSIVSLSVQQLQDMI

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-2350.32Show/hide
Query:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ
        S  +  + E S P++ SV++  + T + RM ELE+KVNMLMKVVEERDYEIA LKNHIES DA ESS   + KN DKGK VMQE+QPQ+STSI SLSVQQ
Subjt:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ

Query:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ
        LQ+MI S        P+    L +K Y K+      P+  + P     F    +P Q
Subjt:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-2350.32Show/hide
Query:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ
        S  +  + E   P++ SV++A + T + RM ELE+KVNMLMKVVEERDYEIA LKNHIES DA ESS     KN DKGK VMQE+QPQ+STSI SLSVQQ
Subjt:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ

Query:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ
        LQ+MI S        P+    L +K Y K+      P+  + P     F    +P Q
Subjt:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ

TrEMBL top hitse value%identityAlignment
A0A5A7STX4 Ty3-gypsy retrotransposon protein2.8e-2457.85Show/hide
Query:  RSKLIYSSNAAPE---SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE
        +S ++   N A +   S  +  + E   P++ SV++  + T + RM ELE+KVNMLMKVVEERDYEIA LKNHIESHD  ESS     KN DKGK VMQE
Subjt:  RSKLIYSSNAAPE---SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE

Query:  NQPQHSTSIVSLSVQQLQDMI
        +QPQ+STSI SLSVQQLQ+MI
Subjt:  NQPQHSTSIVSLSVQQLQDMI

A0A5A7US25 Ty3-gypsy retrotransposon protein2.3e-2363.81Show/hide
Query:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ
        S  +  + E    ++ SVI+  + T + RM ELE+K+NMLMKVVEERDYEIA LKNHIES DA ESS     KN DKGKVVMQE+QPQ+STSI SLSVQQ
Subjt:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ

Query:  LQDMI
        LQ+MI
Subjt:  LQDMI

A0A5A7UXF0 Ty3-gypsy retrotransposon protein8.0e-2450.32Show/hide
Query:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ
        S  +  + E S P++ SV++  + T + RM ELE+KVNMLMKVVEERDYEIA LKNHIES DA ESS   + KN DKGK VMQE+QPQ+STSI SLSVQQ
Subjt:  SKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQ

Query:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ
        LQ+MI S        P+    L +K Y K+      P+  + P     F    +P Q
Subjt:  LQDMIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ

A0A5D3C4W1 Ty3-gypsy retrotransposon protein8.0e-2450.65Show/hide
Query:  EAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQLQD
        E  + E + P++ SV++  + T + RM+ELE+KVNMLMKVVEERDYEIASLKNHIES DA ESS     KN DKGK VMQE+QPQ+STSI SLSVQQLQ+
Subjt:  EAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQLQD

Query:  MIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ
        MI +        P+    L +K Y K+      P+  + P     F    +P Q
Subjt:  MIMSVTSLISAKPSNPNFLLAK-YPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQ

A0A5D3DLA7 Ty3-gypsy retrotransposon protein2.3e-2355.37Show/hide
Query:  RSKLIYSSNA---APESKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE
        +S +I+  N       S  E  + E S P++ SV++A + T +++M ELE+K+NMLMK +E +DYEIASLKNHIES DATESS T  AKN  KGK ++QE
Subjt:  RSKLIYSSNA---APESKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEIASLKNHIESHDATESSQTPVAKNNDKGKVVMQE

Query:  NQPQHSTSIVSLSVQQLQDMI
        +QPQ+STSI SLS+QQLQ+MI
Subjt:  NQPQHSTSIVSLSVQQLQDMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCAAAGATCAAAGCTCAGATCCTCCTCAAATCCAGCTGTAGAACTGAAGAACGAGGCTTAGATCATCTACAAATCCCTCGCAGAACTGAAGAACGAAGTTCAGG
TTCTCTTCAAATCCCGCTGCAGAATCAAAGATCGAAGCTCATATACTCTTCAAACGCCGCTCCAGAATCAAAGATCGAAGCTCAGGCAAATGAGACATCAGATCCTGACG
TGAGGTCTGTAATAATGGCCTACATAGGTACATGCAAAGAAAGAATGATCGAACTGGAAAGGAAAGTCAACATGTTGATGAAGGTAGTTGAAGAGAGAGATTATGAAATT
GCATCTCTAAAGAATCACATAGAAAGTCATGATGCCACTGAGTCAAGCCAAACACCCGTTGCAAAGAATAATGACAAAGGGAAGGTTGTCATGCAAGAAAACCAGCCTCA
ACATTCCACTTCGATTGTTTCATTGTCCGTTCAGCAACTCCAAGATATGATTATGAGTGTAACGTCTCTAATTTCTGCCAAGCCATCAAACCCTAACTTTCTTTTAGCCA
AGTATCCCAAAAAGAGCCAAGCCAAATCCAAGCCATCTAAGCTTCATCTTCCTCACCCTCTTCATGATTTTCCTTCCCTCAAGCACCCTCATCAATCTCTTCATCTCGAG
CTTCCCGTCGCGCCTCAGTCCCTCTTCAGCTCTGGCGTCTTGTCCTTCTTCTCCGACGAGCAACTCAGTCCGCGACAGTTCATGGAGCAGGGCGTAGCAACGACAGTGTG
GGCGTGTTCTTCGATTTCAGCGACTGTTGGCTTCCTTCCTCGATGCTCTCCATTCAATTTCGACGATTCAAGCAGTGGGTCTTTGAGTTTCAGCATCGTTGAGCAAATTC
GGCATTGGGTAAGTTTTAAAGGGTTCCAAAATGAAGAGTTTGATATATATTACATTAATGTTGGTCAAGTATTGAGAAAGCTCTCGGTGCCTGATACACTGCCAACGTCT
GCTGAAAGTGCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTATATTGTAAATGTCTTT
mRNA sequenceShow/hide mRNA sequence
ATGGAATCAAAGATCAAAGCTCAGATCCTCCTCAAATCCAGCTGTAGAACTGAAGAACGAGGCTTAGATCATCTACAAATCCCTCGCAGAACTGAAGAACGAAGTTCAGG
TTCTCTTCAAATCCCGCTGCAGAATCAAAGATCGAAGCTCATATACTCTTCAAACGCCGCTCCAGAATCAAAGATCGAAGCTCAGGCAAATGAGACATCAGATCCTGACG
TGAGGTCTGTAATAATGGCCTACATAGGTACATGCAAAGAAAGAATGATCGAACTGGAAAGGAAAGTCAACATGTTGATGAAGGTAGTTGAAGAGAGAGATTATGAAATT
GCATCTCTAAAGAATCACATAGAAAGTCATGATGCCACTGAGTCAAGCCAAACACCCGTTGCAAAGAATAATGACAAAGGGAAGGTTGTCATGCAAGAAAACCAGCCTCA
ACATTCCACTTCGATTGTTTCATTGTCCGTTCAGCAACTCCAAGATATGATTATGAGTGTAACGTCTCTAATTTCTGCCAAGCCATCAAACCCTAACTTTCTTTTAGCCA
AGTATCCCAAAAAGAGCCAAGCCAAATCCAAGCCATCTAAGCTTCATCTTCCTCACCCTCTTCATGATTTTCCTTCCCTCAAGCACCCTCATCAATCTCTTCATCTCGAG
CTTCCCGTCGCGCCTCAGTCCCTCTTCAGCTCTGGCGTCTTGTCCTTCTTCTCCGACGAGCAACTCAGTCCGCGACAGTTCATGGAGCAGGGCGTAGCAACGACAGTGTG
GGCGTGTTCTTCGATTTCAGCGACTGTTGGCTTCCTTCCTCGATGCTCTCCATTCAATTTCGACGATTCAAGCAGTGGGTCTTTGAGTTTCAGCATCGTTGAGCAAATTC
GGCATTGGGTAAGTTTTAAAGGGTTCCAAAATGAAGAGTTTGATATATATTACATTAATGTTGGTCAAGTATTGAGAAAGCTCTCGGTGCCTGATACACTGCCAACGTCT
GCTGAAAGTGCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTATATTGTAAATGTCTTT
Protein sequenceShow/hide protein sequence
MESKIKAQILLKSSCRTEERGLDHLQIPRRTEERSSGSLQIPLQNQRSKLIYSSNAAPESKIEAQANETSDPDVRSVIMAYIGTCKERMIELERKVNMLMKVVEERDYEI
ASLKNHIESHDATESSQTPVAKNNDKGKVVMQENQPQHSTSIVSLSVQQLQDMIMSVTSLISAKPSNPNFLLAKYPKKSQAKSKPSKLHLPHPLHDFPSLKHPHQSLHLE
LPVAPQSLFSSGVLSFFSDEQLSPRQFMEQGVATTVWACSSISATVGFLPRCSPFNFDDSSSGSLSFSIVEQIRHWVSFKGFQNEEFDIYYINVGQVLRKLSVPDTLPTS
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