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Spg009194 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009194
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:39003328..39005379
RNA-Seq ExpressionSpg009194
SyntenySpg009194
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042456.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.8e-1575.44Show/hide
Query:  NDSAGSTDWAGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        + + G  D AGNEQFAR+ QE+GRP R  PSDPEK YGIERLKKLGATVFEGSTDPA
Subjt:  NDSAGSTDWAGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.6e-1449.07Show/hide
Query:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV
        F N+VMS LH +FN S GS                            T W          A +E+FARSA E+GRP+RVGPS+P+KMYGIERLKKL ATV
Subjt:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV

Query:  FEGSTDPA
        FEGSTDPA
Subjt:  FEGSTDPA

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.1e-1677.59Show/hide
Query:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI
        AG+E+FARSAQE+GRP+RVGPSDPEKMYGIERLKKLGATVFEGSTDPA    +W  ++
Subjt:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.4e-1751.85Show/hide
Query:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV
        F N+VMS LH +FN S GS                            T W          AG+E+FARSA E+GRP+RVGPSDP+KMYGIERLKKLGATV
Subjt:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV

Query:  FEGSTDPA
        FEGSTDPA
Subjt:  FEGSTDPA

XP_008448403.1 PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]2.1e-1677.59Show/hide
Query:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI
        AG+E+FARSAQE+GRP+RVGPSDPEKMYGIERLKKLGATVFEGSTDPA    +W  ++
Subjt:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI

TrEMBL top hitse value%identityAlignment
A0A1S3BJ07 uncharacterized protein LOC1034906041.0e-1677.59Show/hide
Query:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI
        AG+E+FARSAQE+GRP+RVGPSDPEKMYGIERLKKLGATVFEGSTDPA    +W  ++
Subjt:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI

A0A5A7TKI0 DNA/RNA polymerases superfamily protein4.3e-1575.44Show/hide
Query:  NDSAGSTDWAGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        + + G  D AGNEQFAR+ QE+GRP R  PSDPEK YGIERLKKLGATVFEGSTDPA
Subjt:  NDSAGSTDWAGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

A0A5A7UT17 CCHC-type domain-containing protein1.2e-1449.07Show/hide
Query:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV
        F N+VMS LH +FN S GS                            T W          A +E+FARSA E+GRP+RVGPS+P+KMYGIERLKKL ATV
Subjt:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV

Query:  FEGSTDPA
        FEGSTDPA
Subjt:  FEGSTDPA

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.0e-1677.59Show/hide
Query:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI
        AG+E+FARSAQE+GRP+RVGPSDPEKMYGIERLKKLGATVFEGSTDPA    +W  ++
Subjt:  AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLI

A0A5D3CJX3 CCHC-type domain-containing protein4.5e-1751.85Show/hide
Query:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV
        F N+VMS LH +FN S GS                            T W          AG+E+FARSA E+GRP+RVGPSDP+KMYGIERLKKLGATV
Subjt:  FPNRVMSGLHFMFNDSAGS----------------------------TDW----------AGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATV

Query:  FEGSTDPA
        FEGSTDPA
Subjt:  FEGSTDPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGTCGTCAGTGTTGGGCGGCCCCTACTACGACAAAGACGATGGGAGTGTTGGGCGGGCTCCACTACATCGTAGAGCTAGTAAATGTAGAGATCGAGCTCCCCC
GTGCCTGATAACTGCCAAAGGTTATTTTCCAAACCGAGTTATGTCAGGGTTGCACTTCATGTTCAACGATTCAGCAGGGTCAACAGACTGGGCAGGAAACGAGCAGTTTG
CTAGATCTGCACAGGAGGTCGGTAGGCCAAAGAGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGAATAGAACGGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGT
TCCACAGATCCAGCTTGTAGACACCGTATTTGGTCCGGCTTGATTTTTAGTAATAATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGTCGTCAGTGTTGGGCGGCCCCTACTACGACAAAGACGATGGGAGTGTTGGGCGGGCTCCACTACATCGTAGAGCTAGTAAATGTAGAGATCGAGCTCCCCC
GTGCCTGATAACTGCCAAAGGTTATTTTCCAAACCGAGTTATGTCAGGGTTGCACTTCATGTTCAACGATTCAGCAGGGTCAACAGACTGGGCAGGAAACGAGCAGTTTG
CTAGATCTGCACAGGAGGTCGGTAGGCCAAAGAGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGAATAGAACGGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGT
TCCACAGATCCAGCTTGTAGACACCGTATTTGGTCCGGCTTGATTTTTAGTAATAATATTTGA
Protein sequenceShow/hide protein sequence
MMLSSVLGGPYYDKDDGSVGRAPLHRRASKCRDRAPPCLITAKGYFPNRVMSGLHFMFNDSAGSTDWAGNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEG
STDPACRHRIWSGLIFSNNI