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Spg009272 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009272
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:40110950..40119593
RNA-Seq ExpressionSpg009272
SyntenySpg009272
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1951.64Show/hide
Query:  TINLWIFEQTRRISGVLWCF-------EHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------
        T+NLW+F  +   S  L  F         L V+KSNQKL+LVEIELPVP+TL TSAESSRS+SSTW+ELY ESVH+     V+   +  Q   L      
Subjt:  TINLWIFEQTRRISGVLWCF-------EHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------

Query:  EEDDVRWLHAIFRAKLAGGPGG
          +DV WLHA+F AK AGGP G
Subjt:  EEDDVRWLHAIFRAKLAGGPGG

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.9e-1842.31Show/hide
Query:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL
        L V+KSNQKL+L                 VEIELPVP+TLPTSAES  S+SSTW+ELY ESVH+             ++++ NV  G    +  DDV WL
Subjt:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL

Query:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW
        HA+FRAK AGGPGG VT  ++   S+   +      L  S+   S   S + T  W
Subjt:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.1e-1938.54Show/hide
Query:  ITKAHAKPAIAESGCKTINLWIF-----------EQTRRIS---GVLWCFEHLGVYKSNQKLHL--------VEIELPVPNTLPTSAESSRSSSSTWVEL
        I K +AKPAIAESGC    L +            E TR +S   G L   + L +     + +L        VEIELPVP+TLPTSAESS+S+SSTW+EL
Subjt:  ITKAHAKPAIAESGCKTINLWIF-----------EQTRRIS---GVLWCFEHLGVYKSNQKLHL--------VEIELPVPNTLPTSAESSRSSSSTWVEL

Query:  YIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSR
        Y ESVH+  + +             EG    +  DD+ WLHA+F AK AG PGG V      R     ++       YP+ G    G+S  R
Subjt:  YIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSR

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1750.47Show/hide
Query:  VLWCFEHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAG
        V++    L V + N    +VEIELPVP+TLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  G
Subjt:  VLWCFEHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAG

Query:  GPGGSVT
        GPGG VT
Subjt:  GPGGSVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.9e-1842.31Show/hide
Query:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL
        L V+KSNQKL+L                 VEIELPVP+TLPTSAES  S+SSTW+ELY ESVH+             ++++ NV  G    +  DDV WL
Subjt:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL

Query:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW
        HA+FRAK AGGPGG VT  ++   S+   +      L  S+   S   S + T  W
Subjt:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.7e-1951.64Show/hide
Query:  TINLWIFEQTRRISGVLWCF-------EHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------
        T+NLW+F  +   S  L  F         L V+KSNQKL+LVEIELPVP+TL TSAESSRS+SSTW+ELY ESVH+     V+   +  Q   L      
Subjt:  TINLWIFEQTRRISGVLWCF-------EHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI---VNVLFNVQEGQRVSL------

Query:  EEDDVRWLHAIFRAKLAGGPGG
          +DV WLHA+F AK AGGP G
Subjt:  EEDDVRWLHAIFRAKLAGGPGG

A0A5A7TKT0 Reverse transcriptase1.9e-1842.31Show/hide
Query:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL
        L V+KSNQKL+L                 VEIELPVP+TLPTSAES  S+SSTW+ELY ESVH+             ++++ NV  G    +  DDV WL
Subjt:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL

Query:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW
        HA+FRAK AGGPGG VT  ++   S+   +      L  S+   S   S + T  W
Subjt:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW

A0A5A7UAH6 CCHC-type domain-containing protein1.0e-1938.54Show/hide
Query:  ITKAHAKPAIAESGCKTINLWIF-----------EQTRRIS---GVLWCFEHLGVYKSNQKLHL--------VEIELPVPNTLPTSAESSRSSSSTWVEL
        I K +AKPAIAESGC    L +            E TR +S   G L   + L +     + +L        VEIELPVP+TLPTSAESS+S+SSTW+EL
Subjt:  ITKAHAKPAIAESGCKTINLWIF-----------EQTRRIS---GVLWCFEHLGVYKSNQKLHL--------VEIELPVPNTLPTSAESSRSSSSTWVEL

Query:  YIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSR
        Y ESVH+  + +             EG    +  DD+ WLHA+F AK AG PGG V      R     ++       YP+ G    G+S  R
Subjt:  YIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSR

A0A5A7V9N3 Reverse transcriptase1.6e-1750.47Show/hide
Query:  VLWCFEHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAG
        V++    L V + N    +VEIELPVP+TLPTSAESS S+SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  G
Subjt:  VLWCFEHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAG

Query:  GPGGSVT
        GPGG VT
Subjt:  GPGGSVT

A0A5D3D150 Reverse transcriptase1.9e-1842.31Show/hide
Query:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL
        L V+KSNQKL+L                 VEIELPVP+TLPTSAES  S+SSTW+ELY ESVH+             ++++ NV  G    +  DDV WL
Subjt:  LGVYKSNQKLHL-----------------VEIELPVPNTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWL

Query:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW
        HA+FRAK AGGPGG VT  ++   S+   +      L  S+   S   S + T  W
Subjt:  HAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTAGAGATCGAGCTCTCGAGCC
TGATACACTGCCAATGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTCAACGTTCAGGAGG
GTCAGCGGGAGTCATGCCACCACGTCCCAGCAGACGACGCAGGCAGAATCAGGACGGGACGTAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCATTACCCCGAGAG
CACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAACAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAA
AACTATCAACCTCTGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTTGGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGTAGAGA
TCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTG
TTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGAGTGTGACAGT
TGGGATGGAGAGGCGACATTCGACCCTGATTGAGGAGTGGCCTGTGATGTGGAGGCTTTATCCTTCCTCTGGATGTTGTTCTGCTGGAGCTTCCCTATCAAGGACAAGTC
AATGGTTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTAGAGATCGAGCTCTCGAGCC
TGATACACTGCCAATGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTCAACGTTCAGGAGG
GTCAGCGGGAGTCATGCCACCACGTCCCAGCAGACGACGCAGGCAGAATCAGGACGGGACGTAGGATCCTACCCAAAGTCAATCTGAAAGGGGATCCATTACCCCGAGAG
CACATTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAACAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAA
AACTATCAACCTCTGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTTGGGGGTGTACAAGTCGAATCAGAAGCTCCATTTGGTAGAGA
TCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTG
TTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGAGTGTGACAGT
TGGGATGGAGAGGCGACATTCGACCCTGATTGAGGAGTGGCCTGTGATGTGGAGGCTTTATCCTTCCTCTGGATGTTGTTCTGCTGGAGCTTCCCTATCAAGGACAAGTC
AATGGTTGGTTTAA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVGLVNVGCTGRALHNVDRSCRDRALEPDTLPMSAESSRSSSSTWVELYIESVRIVNVLFNVQEGQRESCHHVPADDAGRIRTGRRILPKVNLKGDPLPRE
HIKERVKEEEEEEFRGLRLKKITKAHAKPAIAESGCKTINLWIFEQTRRISGVLWCFEHLGVYKSNQKLHLVEIELPVPNTLPTSAESSRSSSSTWVELYIESVHIVNVL
FNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGSVTVGMERRHSTLIEEWPVMWRLYPSSGCCSAGASLSRTSQWLV