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Spg009292 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009292
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold32:105886..106999
RNA-Seq ExpressionSpg009292
SyntenySpg009292
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8658942.1 hypothetical protein F3Y22_tig00116965pilonHSYRG00405 [Hibiscus syriacus]1.4e-1547.25Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWK
        A  ++M+++ + C+ EFS  + + ++  KSKLF+SPN++  +A  LSN  GIPLT +LG YLGVPI+H R +   Y PL++K++KRLA WK
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWK

KAE8708002.1 protein TRANSPARENT TESTA 12-like [Hibiscus syriacus]3.7e-1647.31Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        A  ++M+++ + C+ EFS  + + ++  KSKLF+SPN++   A  LSN  GIPLT +LG YLGVPI+H R +   Y PL++K++KRLA WKG+
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

OMO57275.1 reverse transcriptase [Corchorus capsularis]3.7e-1652.17Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKG
        AS+D++  +  + ++EF+  S L +S +KSKL+ SPNV +Q A  LS   GIPL  +LG YLGVPI+HG+ SK  Y  +VDKVL+RLA+WKG
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKG

OMO87284.1 reverse transcriptase [Corchorus capsularis]9.8e-1752.69Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        AS+D++  +  + ++EF+  S L +S +KSKL+ SPNV +Q A  LS   GIPL  +LG YLGVPI+HG+ SK  Y  +VDKVL+RLA+WKGK
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

OMO92659.1 reverse transcriptase [Corchorus olitorius]1.1e-1554.22Show/hide
Query:  QECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        ++ + EFS+ S L ++ +KSKL++SPNV    A  LS S GIPL ++LG YLGVPI+HGR SK  Y  ++DKVL+RL +WKGK
Subjt:  QECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

TrEMBL top hitse value%identityAlignment
A0A1R3GGP8 Reverse transcriptase1.8e-1652.17Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKG
        AS+D++  +  + ++EF+  S L +S +KSKL+ SPNV +Q A  LS   GIPL  +LG YLGVPI+HG+ SK  Y  +VDKVL+RLA+WKG
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKG

A0A1R3IXK3 Reverse transcriptase4.8e-1752.69Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        AS+D++  +  + ++EF+  S L +S +KSKL+ SPNV +Q A  LS   GIPL  +LG YLGVPI+HG+ SK  Y  +VDKVL+RLA+WKGK
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

A0A1R3JCV6 Reverse transcriptase5.3e-1654.22Show/hide
Query:  QECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        ++ + EFS+ S L ++ +KSKL++SPNV    A  LS S GIPL ++LG YLGVPI+HGR SK  Y  ++DKVL+RL +WKGK
Subjt:  QECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

A0A6A2WI56 Reverse transcriptase domain-containing protein6.9e-1647.25Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWK
        A  ++M+++ + C+ EFS  + + ++  KSKLF+SPN++  +A  LSN  GIPLT +LG YLGVPI+H R +   Y PL++K++KRLA WK
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWK

A0A6A3AYH3 Protein TRANSPARENT TESTA 12-like1.8e-1647.31Show/hide
Query:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK
        A  ++M+++ + C+ EFS  + + ++  KSKLF+SPN++   A  LSN  GIPLT +LG YLGVPI+H R +   Y PL++K++KRLA WKG+
Subjt:  ASKDEMKDLNQECIEEFSSCSNLVISPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAAGGGAAGTTCGACTGGCTCCTCTCGTGGCGGCCACCGATCAAGAAGAATGAAAGTTATACTGCCTTCCGCCCAGCTCTCACGGATGATGAGCTTTCTAGTTT
GTTGACTGGGGTGTCTCTTGATGAAGTACGAGCTGCCGTATTTTCTATGAAGGGACTCAAAGCACCAGGTAGTTCTCTGAGGCTAATTCAATTCAGTCTTGCTGTGCAAG
AAGCTCTTGCCAACCTCTGTATAGTCCAGTGTGCCGCGAGTAAGGATGAGATGAAGGATTTAAATCAAGAATGTATCGAGGAATTTTCAAGTTGCTCGAACCTGGTGATT
AGCCCGCAGAAGTCTAAACTCTTTGTTTCGCCTAATGTGAGTAGGCAGCTAGCAGCGGAATTGAGTAATTCAAGTGGTATCCCGTTGACAGCAGATCTTGGAGTGTATCT
GGGAGTCCCCATTGTTCATGGTAGGGCCTCTAAGGAATTATATGCCCCGTTGGTGGATAAGGTGCTTAAACGCCTAGCTGATTGGAAAGGAAAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAAGGGAAGTTCGACTGGCTCCTCTCGTGGCGGCCACCGATCAAGAAGAATGAAAGTTATACTGCCTTCCGCCCAGCTCTCACGGATGATGAGCTTTCTAGTTT
GTTGACTGGGGTGTCTCTTGATGAAGTACGAGCTGCCGTATTTTCTATGAAGGGACTCAAAGCACCAGGTAGTTCTCTGAGGCTAATTCAATTCAGTCTTGCTGTGCAAG
AAGCTCTTGCCAACCTCTGTATAGTCCAGTGTGCCGCGAGTAAGGATGAGATGAAGGATTTAAATCAAGAATGTATCGAGGAATTTTCAAGTTGCTCGAACCTGGTGATT
AGCCCGCAGAAGTCTAAACTCTTTGTTTCGCCTAATGTGAGTAGGCAGCTAGCAGCGGAATTGAGTAATTCAAGTGGTATCCCGTTGACAGCAGATCTTGGAGTGTATCT
GGGAGTCCCCATTGTTCATGGTAGGGCCTCTAAGGAATTATATGCCCCGTTGGTGGATAAGGTGCTTAAACGCCTAGCTGATTGGAAAGGAAAA
Protein sequenceShow/hide protein sequence
MSKGKFDWLLSWRPPIKKNESYTAFRPALTDDELSSLLTGVSLDEVRAAVFSMKGLKAPGSSLRLIQFSLAVQEALANLCIVQCAASKDEMKDLNQECIEEFSSCSNLVI
SPQKSKLFVSPNVSRQLAAELSNSSGIPLTADLGVYLGVPIVHGRASKELYAPLVDKVLKRLADWKGK