CuGenDBv2

Gene ID	Spg009342
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	primase homolog protein isoform X2
Genome location	scaffold5:37594224..37598818
RNA-Seq Expression	Spg009342
Synteny	Spg009342
Gene Ontology terms	GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

7.5e-147

70.63

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNFNF F HRS+P S  LN+FS S SPSRF LRFCTTRLSSA+SHAP  P PPPVKVL EKMDLIGIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF
          +    L        DFAMWRCF+ ECGWAGR+     LAFNGFS+T KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+ GRQVAIAF
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF

Query:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS
        TYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+P IEK                 
Subjt:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS

Query:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                     D+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  NRFKDANEV
Subjt:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

8.8e-148

70.63

Show/hide

Query:  MPINTTFNFSFNFNFNFNF-NHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNF F F NHRS P SH LN+FS S SPSRFLRFCTTRLSSAVSHAP  PSPPPVK LME+MDL+GIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNF-NHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF
          +    L        DFAMWRCFQ ECGWAG++     LAFNGF +  KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+AGRQV IAF
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF

Query:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS
        TYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVP IEK                 
Subjt:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS

Query:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                     DTAYQYLWSCKDYLDKVSR+ILATDSD PGQALAEELARRLGK+RCWRV WPYKD  NRFKDANEV
Subjt:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

1.8e-145

70.45

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNFNF F HRS+P S  LN+FS S SPSRF LRFCTTRLSSA+SHAP  P PPPVKVL EKMDLIGIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA
          +    L        DFAMWRCF+ ECGWAGR+     LAFNGFS+T KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+ GR QVAIA
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA

Query:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT
        FTYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+P IEK                
Subjt:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT

Query:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                      D+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  NRFKDANEV
Subjt:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

XP_038893950.1 primase homolog protein isoform X1 [Benincasa hispida]

4.4e-155

74.49

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFS--FSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV-
        M  NTTFN + NFNFN NFNHRS P SHP NDFS  FS SPSRFLRFCTTR SSAVSH P  PSPPPVKVLMEKMDLIGIVCDE CTPGKYYCL CPK  
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFS--FSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV-

Query:  --IFSSRL---------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIA
           F  R          DFAMWRCFQSECGWAGR+     LAFNGFSRTVK VGRSA+E+LVLEPLGDELISYF+KRMISQETLERNVVMQIAGRQVAIA
Subjt:  --IFSSRL---------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIA

Query:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT
        FTYRQNGQLVGCKYRT+D+RFWQEKGTEKLLYGIDDI D +ELIIVEGEMDKLSVEEAG LNCISVPGGAP+KVSTDTVPS EK                
Subjt:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT

Query:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                      DTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD NRFKDANE+
Subjt:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

XP_038893951.1 primase homolog protein isoform X2 [Benincasa hispida]

5.7e-155

74.31

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFS--FSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV-
        M  NTTFN + NFNFN NFNHRS P SHP NDFS  FS SPSRFLRFCTTR SSAVSH P  PSPPPVKVLMEKMDLIGIVCDE CTPGKYYCL CPK  
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFS--FSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV-

Query:  --IFSSRL---------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIA
           F  R          DFAMWRCFQSECGWAGR+     LAFNGFSRTVK VGRSA+E+LVLEPLGDELISYF+KRMISQETLERNVVMQIAGRQVAIA
Subjt:  --IFSSRL---------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIA

Query:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT
        FTYRQNGQLVGCKYRT+D+RFWQEKGTEKLLYGIDDI D +ELIIVEGEMDKLSVEEAG LNCISVPGGAP+KVSTDTVPS EK                
Subjt:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT

Query:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEVA
                                      DTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD NRFKDANE++
Subjt:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEVA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

4.3e-148

70.63

Show/hide

Query:  MPINTTFNFSFNFNFNFNF-NHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNF F F NHRS P SH LN+FS S SPSRFLRFCTTRLSSAVSHAP  PSPPPVK LME+MDL+GIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNF-NHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF
          +    L        DFAMWRCFQ ECGWAG++     LAFNGF +  KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+AGRQV IAF
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF

Query:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS
        TYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVP IEK                 
Subjt:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS

Query:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                     DTAYQYLWSCKDYLDKVSR+ILATDSD PGQALAEELARRLGK+RCWRV WPYKD  NRFKDANEV
Subjt:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

A0A1S3BDI8 primase homolog protein isoform X2

3.6e-147

70.63

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNFNF F HRS+P S  LN+FS S SPSRF LRFCTTRLSSA+SHAP  P PPPVKVL EKMDLIGIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF
          +    L        DFAMWRCF+ ECGWAGR+     LAFNGFS+T KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+ GRQVAIAF
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAF

Query:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS
        TYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+P IEK                 
Subjt:  TYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTS

Query:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                     D+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  NRFKDANEV
Subjt:  LFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

A0A1S4DT27 primase homolog protein isoform X4

3.4e-145

70.38

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNFNF F HRS+P S  LN+FS S SPSRF LRFCTTRLSSA+SHAP  P PPPVKVL EKMDLIGIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA
          +    L        DFAMWRCF+ ECGWAGR+     LAFNGFS+T KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+ GR QVAIA
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA

Query:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT
        FTYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+P IEK                
Subjt:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT

Query:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANE
                                      D+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  NRFKDANE
Subjt:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANE

A0A1S4DTX2 primase homolog protein isoform X1

8.9e-146

70.45

Show/hide

Query:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--
        MPIN+TF F+ NFNFNF F HRS+P S  LN+FS S SPSRF LRFCTTRLSSA+SHAP  P PPPVKVL EKMDLIGIVCDE C PGKYYCL CPK   
Subjt:  MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRF-LRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV--

Query:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA
          +    L        DFAMWRCF+ ECGWAGR+     LAFNGFS+T KMVGRS+KE+LVLEPL DELISYFS RMISQETLERNVVMQ+ GR QVAIA
Subjt:  --IFSSRL--------DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGR-QVAIA

Query:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT
        FTYRQNGQLVGCKYRT+D+RFWQEKGT K LYGIDDI D DELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+P IEK                
Subjt:  FTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFT

Query:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                                      D+AYQYLW CKDYLDKVSRIILATDSD PGQALAEELARRLGKHRCWRVDWPYKD  NRFKDANEV
Subjt:  SLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

A0A6J1CNI0 primase homolog protein isoform X1

1.4e-143

71.32

Show/hide

Query:  NFNFNHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV----IFSSRL--------
        N  FNHR APL HPLN FSFS  P  FLRFC+TR SSA SHAPP PSPPPVKVLMEKMDLIGI CDE CTPGKYYCL CPK     +    L        
Subjt:  NFNFNHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKV----IFSSRL--------

Query:  DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTI
        DFAMWRC+ SECGWAGR+     LAFNG  RTVK+VGRSAKE+LVLEPLGDELI YFSKRMI QETLERN VMQIAGRQ  IAFTYRQNGQL+GCKYRT+
Subjt:  DFAMWRCFQSECGWAGRV----TLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTI

Query:  DRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTV-PSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFP
        D+RFWQEKGTEKLLYGIDDI D DE+IIVEGEMDKLSVEEAGFLNCISVPGGAP KVSTD+V PSIEK                                
Subjt:  DRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTV-PSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFP

Query:  LPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV
                      DTAYQYLWSCKDYLDKVS IILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDD NRFKDANE+
Subjt:  LPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEV

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

6.7e-66

44.09

Show/hide

Query:  ELCTPGKYYCLLCP------------KVIFSSRLDFAMWRCFQSECGWAGRVTLAFNGFSRT---VKMVGRSAKENLVLEPLGDELISYFSKRMISQETL
        E C PG++  L+CP             +  +     A W CF+ +CG  G V  A  G +      K+  +   E + LEPL DE+  YF+ R IS++TL
Subjt:  ELCTPGKYYCLLCP------------KVIFSSRLDFAMWRCFQSECGWAGRVTLAFNGFSRT---VKMVGRSAKENLVLEPLGDELISYFSKRMISQETL

Query:  ERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIE
        ERN VMQ   G ++ IAFTY Q G+LV CKYR++ + F+QE+ T ++LYG+DDI  T E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +PS +
Subjt:  ERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIE

Query:  KVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPY
        K                                              DT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP 
Subjt:  KVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPY

Query:  KDDANRFKDANEV
        K +   FKDANEV
Subjt:  KDDANRFKDANEV

F4I6E6 Primase homolog protein

9.1e-63

42.81

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Query:  LMEKMDLIGIVCDELCTPGKYYCLLCPKVIFSSRLD------------FAMWRCFQSECGWAGRVTLAFNGFSRTVKMVGRSAK----ENLVLEPLGDEL
        LM K+   GI     C PG   CL+CPK       +             A W C + +CG  G   L  +G   +   +G+  +    E++ LEPL DE+
Subjt:  LMEKMDLIGIVCDELCTPGKYYCLLCPKVIFSSRLD------------FAMWRCFQSECGWAGRVTLAFNGFSRTVKMVGRSAK----ENLVLEPLGDEL

Query:  ISYFSKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F+ R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ ++F QE+ T K+LYG+DDI +T E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ISYFSKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APNKVSTDTVPSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELAR
        AP  VS+  +PS  K                                              DTA++Y+W+C DYL K SRI++ATD D PGQALAEELAR
Subjt:  APNKVSTDTVPSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELAR

Query:  RLGKHRCWRVDWPYKDDANRFKDANEV
        RLGK RCW V WP K +   FKDANEV
Subjt:  RLGKHRCWRVDWPYKDDANRFKDANEV

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

6.5e-64

42.81

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Query:  LMEKMDLIGIVCDELCTPGKYYCLLCPKVIFSSRLD------------FAMWRCFQSECGWAGRVTLAFNGFSRTVKMVGRSAK----ENLVLEPLGDEL
        LM K+   GI     C PG   CL+CPK       +             A W C + +CG  G   L  +G   +   +G+  +    E++ LEPL DE+
Subjt:  LMEKMDLIGIVCDELCTPGKYYCLLCPKVIFSSRLD------------FAMWRCFQSECGWAGRVTLAFNGFSRTVKMVGRSAK----ENLVLEPLGDEL

Query:  ISYFSKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGG
          +F+ R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ ++F QE+ T K+LYG+DDI +T E+IIVEGE DKL++EEAGF NC+SVP G
Subjt:  ISYFSKRMISQETLERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGG

Query:  APNKVSTDTVPSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELAR
        AP  VS+  +PS  K                                              DTA++Y+W+C DYL K SRI++ATD D PGQALAEELAR
Subjt:  APNKVSTDTVPSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELAR

Query:  RLGKHRCWRVDWPYKDDANRFKDANEV
        RLGK RCW V WP K +   FKDANEV
Subjt:  RLGKHRCWRVDWPYKDDANRFKDANEV

AT1G30680.1 toprim domain-containing protein

4.8e-67

44.09

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Query:  ELCTPGKYYCLLCP------------KVIFSSRLDFAMWRCFQSECGWAGRVTLAFNGFSRT---VKMVGRSAKENLVLEPLGDELISYFSKRMISQETL
        E C PG++  L+CP             +  +     A W CF+ +CG  G V  A  G +      K+  +   E + LEPL DE+  YF+ R IS++TL
Subjt:  ELCTPGKYYCLLCP------------KVIFSSRLDFAMWRCFQSECGWAGRVTLAFNGFSRT---VKMVGRSAKENLVLEPLGDELISYFSKRMISQETL

Query:  ERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIE
        ERN VMQ   G ++ IAFTY Q G+LV CKYR++ + F+QE+ T ++LYG+DDI  T E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +PS +
Subjt:  ERNVVMQ-IAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDICDTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIE

Query:  KVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPY
        K                                              DT Y++LW+C DYL K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP 
Subjt:  KVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVSRIILATDSDEPGQALAEELARRLGKHRCWRVDWPY

Query:  KDDANRFKDANEV
        K +   FKDANEV
Subjt:  KDDANRFKDANEV

Sequences

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CDS sequence

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ATGCCAATAAACACCACTTTCAATTTCAGCTTCAACTTCAACTTCAACTTCAACTTCAATCATCGCTCTGCTCCTCTTTCTCATCCGCTAAACGATTTCTCCTTCTCCCC
CTCCCCCTCCCGCTTCCTCCGATTCTGCACCACCAGACTATCTTCCGCCGTTTCTCATGCTCCGCCGTCGCCGTCGCCACCACCAGTGAAGGTTTTAATGGAGAAGATGG
ATCTCATCGGAATCGTCTGTGATGAACTCTGTACTCCTGGAAAATACTATTGCTTGTTGTGTCCCAAGGTTATCTTCTCCTCTCGGTTAGATTTTGCAATGTGGAGGTGT
TTCCAATCTGAGTGTGGTTGGGCTGGCCGGGTAACATTGGCATTTAATGGATTCAGCAGAACTGTAAAGATGGTTGGACGGAGTGCAAAGGAGAATTTGGTTTTGGAGCC
TCTTGGTGATGAGCTAATCTCTTACTTCAGCAAGAGAATGATATCCCAGGAAACTCTAGAAAGGAATGTTGTTATGCAAATAGCTGGTCGTCAGGTTGCTATTGCATTTA
CTTACAGACAAAATGGACAGCTCGTCGGTTGCAAGTACCGAACCATAGACAGGAGATTTTGGCAGGAGAAGGGTACAGAAAAGTTATTATATGGGATTGATGACATTTGT
GATACAGATGAACTTATCATTGTTGAAGGCGAAATGGATAAACTTTCAGTAGAAGAAGCTGGCTTTCTCAATTGTATCAGTGTTCCTGGTGGTGCCCCAAACAAGGTTTC
AACTGATACAGTTCCATCAATTGAAAAGGTTTTATTTTATACAAATACTTCTATGCCTGTCTTGTGTGCTTTTACATCATTATTCCAAACTGTCTCAGTTCTGCTGCTAG
TTATCTGTTTTCCTCTTCCCTTTAAGGAACTTGAAGCAGGTTTTGAAATTGGTCAGGATACTGCATATCAGTATTTATGGAGCTGCAAAGACTACTTAGATAAGGTTTCC
CGCATAATCTTGGCTACTGATAGTGATGAACCAGGACAAGCTTTGGCAGAAGAGCTAGCACGTCGCCTTGGAAAACACAGATGTTGGCGGGTAGATTGGCCTTATAAAGA
TGACGCCAATCGTTTTAAAGATGCCAATGAGGTTGCCTTCCTTCTTTGA

mRNA sequence

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Protein sequence

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MPINTTFNFSFNFNFNFNFNHRSAPLSHPLNDFSFSPSPSRFLRFCTTRLSSAVSHAPPSPSPPPVKVLMEKMDLIGIVCDELCTPGKYYCLLCPKVIFSSRLDFAMWRC
FQSECGWAGRVTLAFNGFSRTVKMVGRSAKENLVLEPLGDELISYFSKRMISQETLERNVVMQIAGRQVAIAFTYRQNGQLVGCKYRTIDRRFWQEKGTEKLLYGIDDIC
DTDELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPSIEKVLFYTNTSMPVLCAFTSLFQTVSVLLLVICFPLPFKELEAGFEIGQDTAYQYLWSCKDYLDKVS
RIILATDSDEPGQALAEELARRLGKHRCWRVDWPYKDDANRFKDANEVAFLL

Spg009342 (gene) of Sponge gourd (cylindrica) v1 genome