CuGenDBv2

Gene ID	Spg009347
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	twinkle homolog protein, chloroplastic/mitochondrial
Genome location	scaffold5:37608457..37610996
RNA-Seq Expression	Spg009347
Synteny	Spg009347
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0003690 - double-stranded DNA binding (molecular function) GO:0003697 - single-stranded DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7019451.1 Twinkle-like protein, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.3e-48

76.34

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Query:  MGSIPLCKSTSLAFLSPI----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEEL
        MGS  LCKS+SL FLSP+    SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPP F+ENPL EAL  T+LN+L+KKL+EL
Subjt:  MGSIPLCKSTSLAFLSPI----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEEL

Query:  DIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        DID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  DIDTESCVPGQTNHLLCPMCKGGDSGERSFS

XP_022927084.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata]

4.3e-48

75.76

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Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPP F+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

XP_022927085.1 twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata]

4.3e-48

75.76

Show/hide

Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPP F+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

XP_023000969.1 twinkle homolog protein, chloroplastic/mitochondrial [Cucurbita maxima]

1.1e-48

76.52

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Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPPAF+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

XP_038894379.1 twinkle homolog protein, chloroplastic/mitochondrial [Benincasa hispida]

8.4e-52

80.74

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Query:  MGSIPLCKSTSLAFLSPISSSSPQ---RCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD
        MG+IPLCKSTSL  LS +SSSS     + FLYRSNPLLH  FPV+PMS  KPFSMKPNGVSSFTSH+NVP PPAFLENPLDEAL ST LNVLRKKL+ELD
Subjt:  MGSIPLCKSTSLAFLSPISSSSPQ---RCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD

Query:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS-YLSQ
        IDTESCVPGQTNHLLCPMCKGGDSGER FS Y+S+
Subjt:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS-YLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYM8 Uncharacterized protein

1.1e-44

74.62

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Query:  MGSIPLCKSTSLAFLSPI---SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD
        MGS PLCKSTSL FLS +   SSSS Q+ FLYRS  LLH SFPV+P+S  KPF+MKPNGVSSFTSHANVPRPPA LENP D+A  ST+LN+LRKKL++LD
Subjt:  MGSIPLCKSTSLAFLSPI---SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD

Query:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS
        ID E+CVPGQ   LLCPMCKGGDS ERSFS
Subjt:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS

A0A6J1CL75 transcription termination factor MTERF15, mitochondrial-like isoform X1

1.1e-44

77.04

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Query:  MGSIPLCKSTSLAFLSPISSSSP---QRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD
        MGSIPLCKS SL FLS ISSSS    QR FLYR+N LLH SFPVQPMS  KPFSMK NGVS FTSHANVP PP       DE L STQLNVLRKKLEEL+
Subjt:  MGSIPLCKSTSLAFLSPISSSSP---QRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELD

Query:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS-YLSQ
        I+TESCVPGQTNHLLCPMCKGGDSGERS S Y+S+
Subjt:  IDTESCVPGQTNHLLCPMCKGGDSGERSFS-YLSQ

A0A6J1EH06 twinkle homolog protein, chloroplastic/mitochondrial isoform X1

2.1e-48

75.76

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Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPP F+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

A0A6J1EMW1 twinkle homolog protein, chloroplastic/mitochondrial isoform X2

2.1e-48

75.76

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Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPP F+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

A0A6J1KLG2 twinkle homolog protein, chloroplastic/mitochondrial

5.5e-49

76.52

Show/hide

Query:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE
        MGS  LCKS+SL FLSP+     SSSS QR FLY+SN +LH SFPV+PMS GK FSMKPNGVSSFTSHANVPRPPAF+ENPL EAL  T+LN+L+KKL+E
Subjt:  MGSIPLCKSTSLAFLSPI-----SSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEE

Query:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        LDID E CVPGQTNHLLCPMCKGGDSGER+ S
Subjt:  LDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

4.7e-13

39.82

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Query:  SPISSSSPQRCFLYRS-NPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCP
        SP  SSS Q   + R   P+L      +P+S   P+  + NG+SS+ S   VP  P   E   D+ ++ ++L  LR+KL E  +D E+C PGQ + L+CP
Subjt:  SPISSSSPQRCFLYRS-NPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCP

Query:  MCKGGDSGERSFS
         C+GG+SGE+S S
Subjt:  MCKGGDSGERSFS

F4I6E6 Primase homolog protein

1.2e-05

36.9

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Query:  MSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        MS   P     NG SS  S   VP      E    + ++ ++L  L +KL E  ID ++C PG  + L+CP C+ GDSGE+S +
Subjt:  MSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

8.7e-07

36.9

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Query:  MSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCPMCKGGDSGERSFS
        MS   P     NG SS  S   VP      E    + ++ ++L  L +KL E  ID ++C PG  + L+CP C+ GDSGE+S +
Subjt:  MSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCPMCKGGDSGERSFS

AT1G30680.1 toprim domain-containing protein

3.3e-14

39.82

Show/hide

Query:  SPISSSSPQRCFLYRS-NPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCP
        SP  SSS Q   + R   P+L      +P+S   P+  + NG+SS+ S   VP  P   E   D+ ++ ++L  LR+KL E  +D E+C PGQ + L+CP
Subjt:  SPISSSSPQRCFLYRS-NPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNHLLCP

Query:  MCKGGDSGERSFS
         C+GG+SGE+S S
Subjt:  MCKGGDSGERSFS

Sequences

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CDS sequence

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ATGGGTTCTATTCCTTTATGCAAGTCCACTTCTCTGGCATTCCTGTCACCCATTTCTTCTTCTTCCCCACAGAGGTGTTTCCTGTACAGAAGCAATCCTCTTCTCCATAG
GTCGTTTCCTGTACAACCCATGTCCCATGGCAAACCCTTTTCAATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAGACCTCCAGCCTTTTTGG
AGAATCCACTAGACGAGGCTTTAATCTCGACTCAATTGAATGTTCTGAGAAAAAAATTGGAGGAACTTGACATTGACACCGAATCTTGTGTTCCAGGGCAGACAAACCAC
TTGCTTTGTCCAATGTGCAAAGGTGGCGATTCAGGTGAACGGTCCTTCTCCTATTTATCTCAGAAGATGGaaaaagtagctgaagtcttcgtccagcacttttggactct
tcagttcttcaattgcattggcttgcatatctcctga

mRNA sequence

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Protein sequence

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MGSIPLCKSTSLAFLSPISSSSPQRCFLYRSNPLLHRSFPVQPMSHGKPFSMKPNGVSSFTSHANVPRPPAFLENPLDEALISTQLNVLRKKLEELDIDTESCVPGQTNH
LLCPMCKGGDSGERSFSYLSQKMEKVAEVFVQHFWTLQFFNCIGLHIS

Spg009347 (gene) of Sponge gourd (cylindrica) v1 genome