; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009486 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009486
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold9:24333604..24337618
RNA-Seq ExpressionSpg009486
SyntenySpg009486
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.2e-1541.1Show/hide
Query:  IGKAQAKPAIAESVFNLSTSAENLESVLSVFG-AFLDKLVGNP---VFNSSGFSEIS--IDYMTEILSPRLY-GTVCTQVEIELPVPDTLPTSAKSSRSS
        I K  AKPAIAE       S  N + ++ +FG ++L++L G     +  S GF   S  +  +     P L+ G +   VEIELPVPDTLPTSA+SS+S+
Subjt:  IGKAQAKPAIAESVFNLSTSAENLESVLSVFG-AFLDKLVGNP---VFNSSGFSEIS--IDYMTEILSPRLY-GTVCTQVEIELPVPDTLPTSAKSSRSS

Query:  SSMWVELYIESV----------------YIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV
        SS W+ELY ESV                Y+  EG    +  DD+ WLHA+F  K AG  GGGV
Subjt:  SSMWVELYIESV----------------YIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.0e-1651.92Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYI-------------------VNEGQRVSLEEDDVRWLHAIFRTKLAGGLG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSA+SS S+ + W+ELY ESV++                   V+ G    +  DDV WLHA+FR K A   G
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYI-------------------VNEGQRVSLEEDDVRWLHAIFRTKLAGGLG

Query:  GGVT
          VT
Subjt:  GGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.7e-2159.41Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSA+SS S+SS W+ELY+E V++        + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1851.22Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESV----------------YIVNEGQRVSLEE
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSA+   S+SS W+ELY+ESV                Y+  EG    +  
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESV----------------YIVNEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGVT
        DDV WLHA+FR K AGG  GGVT
Subjt:  DDVRWLHAIFRTKLAGGLGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.7e-2159.41Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSA+SS S+SS W+ELY+E V++        + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein3.5e-1541.1Show/hide
Query:  IGKAQAKPAIAESVFNLSTSAENLESVLSVFG-AFLDKLVGNP---VFNSSGFSEIS--IDYMTEILSPRLY-GTVCTQVEIELPVPDTLPTSAKSSRSS
        I K  AKPAIAE       S  N + ++ +FG ++L++L G     +  S GF   S  +  +     P L+ G +   VEIELPVPDTLPTSA+SS+S+
Subjt:  IGKAQAKPAIAESVFNLSTSAENLESVLSVFG-AFLDKLVGNP---VFNSSGFSEIS--IDYMTEILSPRLY-GTVCTQVEIELPVPDTLPTSAKSSRSS

Query:  SSMWVELYIESV----------------YIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV
        SS W+ELY ESV                Y+  EG    +  DD+ WLHA+F  K AG  GGGV
Subjt:  SSMWVELYIESV----------------YIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGV

A0A5A7V638 Uncharacterized protein2.4e-1651.92Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYI-------------------VNEGQRVSLEEDDVRWLHAIFRTKLAGGLG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSA+SS S+ + W+ELY ESV++                   V+ G    +  DDV WLHA+FR K A   G
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYI-------------------VNEGQRVSLEEDDVRWLHAIFRTKLAGGLG

Query:  GGVT
          VT
Subjt:  GGVT

A0A5A7VMG9 Reverse transcriptase4.2e-2159.41Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSA+SS S+SS W+ELY+E V++        + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

A0A5D3CCC7 DNA/RNA polymerases superfamily protein6.8e-1951.22Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESV----------------YIVNEGQRVSLEE
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSA+   S+SS W+ELY+ESV                Y+  EG    +  
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESV----------------YIVNEGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGLGGGVT
        DDV WLHA+FR K AGG  GGVT
Subjt:  DDVRWLHAIFRTKLAGGLGGGVT

A0A5D3DX39 Reverse transcriptase4.2e-2159.41Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSA+SS S+SS W+ELY+E V++        + EDDV WLHA+FR K AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAAAAGTCGTGATGCCAATCTGAAGAAAGCGCTGCAGGAGAATTTTTCCAAACCCTGCGGCAA
AGAAGATTCTGAGCACTTGAGGGAGAGAGTGAAGAAGATAGGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTTCAACTTGTCAACCTCTGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAATTCTTCAGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTG
AGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCCAGATCAAGCTCCAGTATGTGGGT
GGAGTTGTATATTGAGTCCGTCTATATTGTAAATGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTG
GTCTGGGAGGGGGTGTGACATTTGTGATACCCACAAATTATTTTGCTGCAGCAGAGCTTGGTTTTGCAGAATGCTCAGAAAGTGTTGCTGGGCGACTTAAGGGAGCAAAA
TCTGTGCTGGAGCAAAGCTGGGAGCAGAACTGCCACGTCACAACTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAGTTTGCCGAGAGGCAAGCTTTAACCTTCTGGAACTATGTTAAAAGTCGTGATGCCAATCTGAAGAAAGCGCTGCAGGAGAATTTTTCCAAACCCTGCGGCAA
AGAAGATTCTGAGCACTTGAGGGAGAGAGTGAAGAAGATAGGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTTCAACTTGTCAACCTCTGCAGAGAACCTCG
AATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAATTCTTCAGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTG
AGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCCAGATCAAGCTCCAGTATGTGGGT
GGAGTTGTATATTGAGTCCGTCTATATTGTAAATGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTG
GTCTGGGAGGGGGTGTGACATTTGTGATACCCACAAATTATTTTGCTGCAGCAGAGCTTGGTTTTGCAGAATGCTCAGAAAGTGTTGCTGGGCGACTTAAGGGAGCAAAA
TCTGTGCTGGAGCAAAGCTGGGAGCAGAACTGCCACGTCACAACTCGTTAG
Protein sequenceShow/hide protein sequence
MQEFAERQALTFWNYVKSRDANLKKALQENFSKPCGKEDSEHLRERVKKIGKAQAKPAIAESVFNLSTSAENLESVLSVFGAFLDKLVGNPVFNSSGFSEISIDYMTEIL
SPRLYGTVCTQVEIELPVPDTLPTSAKSSRSSSSMWVELYIESVYIVNEGQRVSLEEDDVRWLHAIFRTKLAGGLGGGVTFVIPTNYFAAAELGFAECSESVAGRLKGAK
SVLEQSWEQNCHVTTR