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Spg009487 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009487
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease P
Genome locationscaffold9:25712864..25713873
RNA-Seq ExpressionSpg009487
SyntenySpg009487
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030677 - ribonuclease P complex (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
InterPro domainsIPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0847030.1 hypothetical protein [Gossypium schwendimanii]2.6e-3671.96Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL
        M+ FKNRY+V+EVLLDPNKDI+  DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQGN +ACK  AL+ DELKFE+YKLMVG  L  DV Q M NCL
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL

Query:  EKIKTLE
        EKI+ LE
Subjt:  EKIKTLE

XP_017974726.1 PREDICTED: probable ribonuclease P/MRP protein subunit POP5 isoform X2 [Theobroma cacao]2.0e-3672.9Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL
        M+ FKNRY+V+EV LDPNK+    DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQG+ RACKNTAL+ DELKFE+YKLMVG  LS DV Q M NCL
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL

Query:  EKIKTLE
        EKIK LE
Subjt:  EKIKTLE

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]3.4e-3658.17Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------
        M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ                                         
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------

Query:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
             GN+RACKNTALRLDELKFE+YKLMVGP +SD VN QM NCLEKI++L+
Subjt:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]2.6e-3658.17Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------
        M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ                                         
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------

Query:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
             GN+RACKNTALR+DELKFE+YKLMVGP +SD VN QM NCLEKI+TL+
Subjt:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

XP_023524475.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]4.0e-3758.82Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------
        M+ FKNRYLV EV LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ                                         
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------

Query:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
             GN+RACKNTALR+DELKFE+YKLMVGP++SD VN QMHNCLEKI+TL+
Subjt:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

TrEMBL top hitse value%identityAlignment
A0A058ZYW8 Ribonuclease P3.4e-3468.22Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL
        M+ FKNRY+V+EV LDPN+++   DPII+TQ+NVSKAI+DSIL+NFG CG ASSLGSFQG+ +ACK  AL+ DELKFE+YKL+ G  LS +V QQMHNC 
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL

Query:  EKIKTLE
        EKIK LE
Subjt:  EKIKTLE

A0A6J1EVL4 Ribonuclease P1.6e-3658.17Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------
        M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ                                         
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------

Query:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
             GN+RACKNTALRLDELKFE+YKLMVGP +SD VN QM NCLEKI++L+
Subjt:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

A0A6J1IBH7 Ribonuclease P1.2e-3658.17Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------
        M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ                                         
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ-----------------------------------------

Query:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
             GN+RACKNTALR+DELKFE+YKLMVGP +SD VN QM NCLEKI+TL+
Subjt:  -----GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

A0A7J9KKS9 Ribonuclease P1.2e-3671.96Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL
        M+ FKNRY+V+EVLLDPNKDI+  DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQGN +ACK  AL+ DELKFE+YKLMVG  L  DV Q M NCL
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL

Query:  EKIKTLE
        EKI+ LE
Subjt:  EKIKTLE

A0A7J9KNX4 Ribonuclease P1.8e-3569.44Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL
        M+ FKNRY+V+EVLLDPNK+I+  DPI++TQ+N+SKAIKD IL+NFG CG ASSLGSFQG+ +ACK   L+ DELKFE+YKLMVG  LS DV Q M NCL
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCL

Query:  EKIKTLEQ
        EKI+ LEQ
Subjt:  EKIKTLEQ

SwissProt top hitse value%identityAlignment
Q6AWV1 Probable ribonuclease P/MRP protein subunit POP53.9e-1940.26Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ----------------------------------------
        M+ FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKDSIL+NFG CG  SSLGSFQ                                        
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ----------------------------------------

Query:  ------GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
              G  RAC++TAL+ D+ KFE+        LS++  +QM+  LEKIK LE
Subjt:  ------GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE

Arabidopsis top hitse value%identityAlignment
AT1G04635.1 ribonuclease P family protein / Rpp14 family protein2.8e-2040.26Show/hide
Query:  MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ----------------------------------------
        M+ FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKDSIL+NFG CG  SSLGSFQ                                        
Subjt:  MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ----------------------------------------

Query:  ------GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE
              G  RAC++TAL+ D+ KFE+        LS++  +QM+  LEKIK LE
Subjt:  ------GNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAGCATTCTTCTCAACTTCGGAGCGTGTGGTTTTGCGTCCTCACTTGGATCTTTTCAAGGAAATACAAGGGCTTGCAAAAACACTGCCTTGAGGTTGGATG
AATTGAAGTTTGAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGATGTCAATCAGCAAATGCACAACTGTCTTGAGAAGATAAAAACTTTAGAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAGCATTCTTCTCAACTTCGGAGCGTGTGGTTTTGCGTCCTCACTTGGATCTTTTCAAGGAAATACAAGGGCTTGCAAAAACACTGCCTTGAGGTTGGATG
AATTGAAGTTTGAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGATGTCAATCAGCAAATGCACAACTGTCTTGAGAAGATAAAAACTTTAGAGCAGTGA
Protein sequenceShow/hide protein sequence
MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLEQ