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Spg009506 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009506
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationscaffold9:24312968..24318992
RNA-Seq ExpressionSpg009506
SyntenySpg009506
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4262223.1 unnamed protein product [Prunus armeniaca]4.6e-2153.97Show/hide
Query:  ELDFQVPSKCK----------FILKARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEV
        ELDFQVPSKCK           I KARIQIWLFEQKD RIEGRII                                       GFDEYMNLVLD+AEEV
Subjt:  ELDFQVPSKCK----------FILKARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEV

Query:  NVKKKSRKTLGRILLKGDNITLMMNT
        ++KK +RK+LGRILLKGDNITLMMNT
Subjt:  NVKKKSRKTLGRILLKGDNITLMMNT

KAA3468389.1 small nuclear ribonucleoprotein E-like [Gossypium australe]3.5e-2162.86Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLF----GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI
        KARIQIWLFEQKDLRIEGRII  +      ++            E + L     + L LF    GFDEYMNLVLDDAEEVNVKKKSRK+LGRILLKGDNI
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLF----GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI

Query:  TLMMN
        TLMMN
Subjt:  TLMMN

KAG6739774.1 hypothetical protein POTOM_057389 [Populus tomentosa]6.4e-2363.89Show/hide
Query:  KARIQIWLFEQKDLRIEGRII------TCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGD
        KARIQIWLFEQKDLRIEGRII       C  I     I R +   H  V  V  L    +V+  + GFDEYMNLVL+DAEEVN+KKKSRK+LGRILLKGD
Subjt:  KARIQIWLFEQKDLRIEGRII------TCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGD

Query:  NITLMMNT
        NITLMMNT
Subjt:  NITLMMNT

KAG6740799.1 hypothetical protein POTOM_056268 [Populus tomentosa]9.2e-2263.73Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        KARIQIWLFEQKDLRIEGRII      R   +     +S G   E+   M          GFDEYMNLVL+DAEEVN+KKKSRK+LGRILLKGDNITLMM
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  NT
        NT
Subjt:  NT

KAG6770106.1 hypothetical protein POTOM_025774 [Populus tomentosa]3.5e-2155.45Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGL--------FGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLK
        KARIQIWLFEQKDLRIEGRII    + +  +++ G+      ++        +++ + +         GFDEYMNLVL+DAEEVN+KKKSRK+LGRILLK
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGL--------FGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLK

Query:  GDNITLMMNT
        GDNITLMMNT
Subjt:  GDNITLMMNT

TrEMBL top hitse value%identityAlignment
A0A0E0CEU5 Small nuclear ribonucleoprotein E1.9e-2053.45Show/hide
Query:  KARIQIWLFEQKDLRIEGRII-------------TCAAIKRNNRIFRGVERSHGE-VWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTL
        KARIQIWLFEQKDLRIEGRII             T +  + +++ F  +     E ++    ++ PV + +   GFDEYMNLVLD+AEE+N+KK +RK+L
Subjt:  KARIQIWLFEQKDLRIEGRII-------------TCAAIKRNNRIFRGVERSHGE-VWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTL

Query:  GRILLKGDNITLMMNT
        GRILLKGDNITLMMNT
Subjt:  GRILLKGDNITLMMNT

A0A5B6VGS0 Small nuclear ribonucleoprotein E1.7e-2162.86Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLF----GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI
        KARIQIWLFEQKDLRIEGRII  +      ++            E + L     + L LF    GFDEYMNLVLDDAEEVNVKKKSRK+LGRILLKGDNI
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLF----GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI

Query:  TLMMN
        TLMMN
Subjt:  TLMMN

A0A6J1E1F5 Small nuclear ribonucleoprotein E1.9e-2062.75Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        KARIQIWLFEQKDLRIEGRII               E   G  +  ++++    + L   GFDEYMNLVLDDAEEVNVKKKS+K LGRILLKGDNITLMM
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  NT
        NT
Subjt:  NT

A0A6J1JMJ0 Small nuclear ribonucleoprotein E1.9e-2063.73Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        KARIQIWLFEQKDLRIEGRII    + R +  F                   V + L   GFDEYMNLVLDDAEEVNVKKKS+K LGRILLKGDNITLMM
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  NT
        NT
Subjt:  NT

A0A6J5TE82 Small nuclear ribonucleoprotein E2.2e-2153.97Show/hide
Query:  ELDFQVPSKCK----------FILKARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEV
        ELDFQVPSKCK           I KARIQIWLFEQKD RIEGRII                                       GFDEYMNLVLD+AEEV
Subjt:  ELDFQVPSKCK----------FILKARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEV

Query:  NVKKKSRKTLGRILLKGDNITLMMNT
        ++KK +RK+LGRILLKGDNITLMMNT
Subjt:  NVKKKSRKTLGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E9.6e-1444.55Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        ++RIQ+WL+EQ ++RIEG II                                       GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ 
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        +
Subjt:  N

A4FUI2 Small nuclear ribonucleoprotein E9.6e-1444.55Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        ++RIQ+WL+EQ ++RIEG II                                       GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ 
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        +
Subjt:  N

P62303 Small nuclear ribonucleoprotein E9.6e-1444.55Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        ++RIQ+WL+EQ ++RIEG II                                       GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ 
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        +
Subjt:  N

P62304 Small nuclear ribonucleoprotein E9.6e-1444.55Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        ++RIQ+WL+EQ ++RIEG II                                       GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ 
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        +
Subjt:  N

P62305 Small nuclear ribonucleoprotein E9.6e-1444.55Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        ++RIQ+WL+EQ ++RIEG II                                       GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ 
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        +
Subjt:  N

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein2.4e-2054.9Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        KARIQIWLFEQKDLRIEGRI                                        GFDEYMNLVLD+AEEV++KK +RK LGRILLKGDNITLMM
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  NT
        NT
Subjt:  NT

AT2G18740.2 Small nuclear ribonucleoprotein family protein7.0e-1247.13Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLG
        KARIQIWLFEQKDLRIEGRI                                        GFDEYMNLVLD+AEEV++KK +RK LG
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein2.4e-2055.45Show/hide
Query:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM
        KARIQIWLFEQKDLRIEGRI                                        GFDEYMNLVLD+AEEV++KKK+RK LGRILLKGDNITLMM
Subjt:  KARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMM

Query:  N
        N
Subjt:  N


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTCGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCATTCTCAAAGCTCGGATTCAAATATGGCTTTTTGAGCAGAAAGACCTGAGGAT
CGAAGGCCGAATCATCACTTGTGCTGCGATCAAGAGAAATAATAGGATTTTTAGAGGGGTGGAGAGGTCGCATGGCGAAGTATGGGAGGTGATGAGTTTAATGCCTCCTG
TGAACGTAGCACTAGGCCTTTTTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCCGAGGAAGTGAATGTAAAGAAGAAGAGCAGGAAGACTTTAGGTAGGATA
TTGCTTAAAGGAGATAACATAACTCTGATGATGAACACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTCGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCATTCTCAAAGCTCGGATTCAAATATGGCTTTTTGAGCAGAAAGACCTGAGGAT
CGAAGGCCGAATCATCACTTGTGCTGCGATCAAGAGAAATAATAGGATTTTTAGAGGGGTGGAGAGGTCGCATGGCGAAGTATGGGAGGTGATGAGTTTAATGCCTCCTG
TGAACGTAGCACTAGGCCTTTTTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCCGAGGAAGTGAATGTAAAGAAGAAGAGCAGGAAGACTTTAGGTAGGATA
TTGCTTAAAGGAGATAACATAACTCTGATGATGAACACGTAA
Protein sequenceShow/hide protein sequence
MAVRAPSELDFQVPSKCKFILKARIQIWLFEQKDLRIEGRIITCAAIKRNNRIFRGVERSHGEVWEVMSLMPPVNVALGLFGFDEYMNLVLDDAEEVNVKKKSRKTLGRI
LLKGDNITLMMNT