CuGenDBv2

Gene ID	Spg009508
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease P
Genome location	scaffold9:25506258..25511854
RNA-Seq Expression	Spg009508
Synteny	Spg009508
Gene Ontology terms	GO:0001682 - tRNA 5'-leader removal (biological process) GO:0030677 - ribonuclease P complex (cellular component)
InterPro domains	IPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061295.1 putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa]

1.1e-25

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

XP_004139703.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]

6.7e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+V EVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I ++ +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]

8.8e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + + V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]

3.9e-26

47.73

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]

1.6e-27

49.43

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+VLEVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+RTISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7W3 Ribonuclease P

3.3e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+V EVLLDPNKD+   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I ++ +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

A0A1S3CEI9 Ribonuclease P

5.6e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

A0A5D3CDD4 Ribonuclease P

5.6e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MVRFKNRY+V EVLLDPNK++   DPIIITQYNVSKAIKD+ILLNFGECGFAS+L   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDLS
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

A0A6J1EVL4 Ribonuclease P

4.3e-26

47.16

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + + V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

A0A6J1IBH7 Ribonuclease P

1.9e-26

47.73

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Query:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKD+ILLNFGECGFASSL   + K V         NP                          
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGF

Query:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                     I +L +                       +RASREDYQNVWAAITM+R+ISNCPVVFNLLDL+
Subjt:  GVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

SwissProt top hits

e value

%identity

Alignment

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP5

1.6e-17

35.03

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Query:  MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVG
        MV FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKD+IL+NFGECG  SSL   + K V         NP                         
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVG

Query:  FGVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                      I +L +                       +R+SRE+++ VW AIT++++I NCPV+ NLLD+S
Subjt:  FGVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

Arabidopsis top hits

e value

%identity

Alignment

AT1G04635.1 ribonuclease P family protein / Rpp14 family protein

1.1e-18

35.03

Show/hide

Query:  MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVG
        MV FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKD+IL+NFGECG  SSL   + K V         NP                         
Subjt:  MVRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVG

Query:  FGVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS
                      I +L +                       +R+SRE+++ VW AIT++++I NCPV+ NLLD+S
Subjt:  FGVGLETGLWIGVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

Sequences

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CDS sequence

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ATGGTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAACATTCTTCTCAACTTCGGAGAGTGTGGTTTTGCTTCCTCACTTAAACAACAGAGAGAGAAGAAAGTTGGACAGTACTGCTTTGCAATGGAAGCGAATC
CTGGGGGGATTGATGGAGTAGGAGATGGGTCAGAAACAGAGAGCAGGGGGCGAACAGGGGAGGGATTTGGTGTAGGATTTGGGGTGGGATTAGAAACAGGGTTATGGATT
GGGGTTGAAATTGGAGAATTAGGGTTGACAGTAGGAGGATTTGGTTGTTCAGACGAGGTAGACGATGAGCCCTCTTCAACAGCCATTAGGGGAGAAATGAGAGCCTCTAG
AGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGATGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGT

mRNA sequence

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Protein sequence

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MVRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDNILLNFGECGFASSLKQQREKKVGQYCFAMEANPGGIDGVGDGSETESRGRTGEGFGVGFGVGLETGLWI
GVEIGELGLTVGGFGCSDEVDDEPSSTAIRGEMRASREDYQNVWAAITMMRTISNCPVVFNLLDLS

Spg009508 (gene) of Sponge gourd (cylindrica) v1 genome