; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg009514 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009514
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:25461574..25465207
RNA-Seq ExpressionSpg009514
SyntenySpg009514
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.0e-2238.64Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDS
        E+K+ L ++ V + +   A + ++  +       +  E L+QFGTF+PVVVRF +E   + SQEK   IE ++EGWT+V RRKK+K +  +KE R +R+ 
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDS

Query:  KRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        ++  K+Q+ K KKK+R+ K + E+ +DF      +TLA++FP RFL D Q E   +V CH ++ +E++++P  S E
Subjt:  KRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-2344.6Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+P+VV+F +E  ++ S  K  SIE +NEGW +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +T+
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A+ FP RFL D Q E  E++TCH ++  E++ +P+ S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

KAA0047638.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]3.8e-2529.91Show/hide
Query:  ESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVDERDLEIAYLKN---------------------------
        ESSK ++  K+N L+++   T  + K   +PD+MSVMMAD+     MTEMERK+N LMK V+ERD EI  L+N                           
Subjt:  ESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVDERDLEIAYLKN---------------------------

Query:  --------------------------------------------------------------------QLQNRET----------AESSQT---------
                                                                            +  N+ET           E +QT         
Subjt:  --------------------------------------------------------------------QLQNRET----------AESSQT---------

Query:  -----------PERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKS
                    ERL+QFGTF+P+VV+F +E T + SQEK  SIE +NEGW +V RRKK+K +  +KES  +R+  R  K+Q+ K KKK ++ K V ++ 
Subjt:  -----------PERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKS

Query:  EDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        +DF      +TL ++FP RFL D + E L +V CH ++  E + +   S E
Subjt:  EDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.6e-2446.04Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+PVVV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + E+ +DF      +TL
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A +FP RFL D Q E  E+V CH +D +E++ +P  S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

KAA0059012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2245.32Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+P +V+F +E   + SQEK  SIE ++EGW +V RRKK+K +  +KESR +R+ +R  K+Q+ K KKK+R+ K V E+ +D   P P +TL
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A++FP +FL D Q E    V CH +D  E++ +   S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

TrEMBL top hitse value%identityAlignment
A0A5A7TXJ5 Retrotransposon protein putative ty3-gypsy sub-class1.9e-2529.91Show/hide
Query:  ESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVDERDLEIAYLKN---------------------------
        ESSK ++  K+N L+++   T  + K   +PD+MSVMMAD+     MTEMERK+N LMK V+ERD EI  L+N                           
Subjt:  ESSKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVDERDLEIAYLKN---------------------------

Query:  --------------------------------------------------------------------QLQNRET----------AESSQT---------
                                                                            +  N+ET           E +QT         
Subjt:  --------------------------------------------------------------------QLQNRET----------AESSQT---------

Query:  -----------PERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKS
                    ERL+QFGTF+P+VV+F +E T + SQEK  SIE +NEGW +V RRKK+K +  +KES  +R+  R  K+Q+ K KKK ++ K V ++ 
Subjt:  -----------PERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKS

Query:  EDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        +DF      +TL ++FP RFL D + E L +V CH ++  E + +   S E
Subjt:  EDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

A0A5A7TY01 Ty3-gypsy retrotransposon protein1.3e-2344.6Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+P+VV+F +E  ++ S  K  SIE +NEGW +V RR K+K +  +KES  +R+ +R  K+Q+ K KKK+R+ K V E+ +DF  P   +T+
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A+ FP RFL D Q E  E++TCH ++  E++ +P+ S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

A0A5A7USZ1 Retrotransposon gag protein6.6e-2345.32Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+P +V+F +E   + SQEK  SIE ++EGW +V RRKK+K +  +KESR +R+ +R  K+Q+ K KKK+R+ K V E+ +D   P P +TL
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A++FP +FL D Q E    V CH +D  E++ +   S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

A0A5D3BE72 Ty3-gypsy retrotransposon protein2.7e-2446.04Show/hide
Query:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL
        E L+QFGTF+PVVV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + E+ +DF      +TL
Subjt:  ERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITL

Query:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        A +FP RFL D Q E  E+V CH +D +E++ +P  S E
Subjt:  AEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

A0A5D3BSG5 Uncharacterized protein5.1e-2338.64Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDS
        E+K+ L ++ V + +   A + ++  +       +  E L+QFGTF+PVVVRF +E   + SQEK   IE ++EGWT+V RRKK+K +  +KE R +R+ 
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPERLIQFGTFDPVVVRFRKEATMKGSQEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDS

Query:  KRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE
        ++  K+Q+ K KKK+R+ K + E+ +DF      +TLA++FP RFL D Q E   +V CH ++ +E++++P  S E
Subjt:  KRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPASSSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGAATCAGCAAGTAAAGCTCGTGCAATGACTAAGCCATCCTCCATCGAAACTCTTGGTATGGATTGCAACTCCGTATACAACTCCTTTCGACGCTTATGCTCCAT
CTCCTTTTTCGTCGGCTATTGTGCAATTTTCTCAATTTGTTGTGTAGTCATCTGGAACCTATTCTCTAATACCTCAACCATGTTCCTCATAGACAATCGGTTCCTCTGGG
GTGTTCATGATGGCTCCGCACCAGTAGCTCCAGCTCTTGCTGTCAATATTGGGGAGGATCATACTCCTCTTGCTGTTGCAAACAGGATCTCAAAGCTGATTGAAGAATCC
TCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCCGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGC
TGATGTAGACCAGGATGAAAGAATGACAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGC
AAAACCGAGAAACAGCTGAGTCTAGCCAGACCCCTGAGCGGCTGATTCAATTTGGGACCTTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCC
CAAGAAAAATATAATTCTATTGAATATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGA
TAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAA
CTTTGGCAGAATACTTCCCAAGGCGCTTCCTTGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCT
AGTTCCTCGGAACGGTGGCAAGTCCAGGAGACTTATCCTCTTTCAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGAATCAGCAAGTAAAGCTCGTGCAATGACTAAGCCATCCTCCATCGAAACTCTTGGTATGGATTGCAACTCCGTATACAACTCCTTTCGACGCTTATGCTCCAT
CTCCTTTTTCGTCGGCTATTGTGCAATTTTCTCAATTTGTTGTGTAGTCATCTGGAACCTATTCTCTAATACCTCAACCATGTTCCTCATAGACAATCGGTTCCTCTGGG
GTGTTCATGATGGCTCCGCACCAGTAGCTCCAGCTCTTGCTGTCAATATTGGGGAGGATCATACTCCTCTTGCTGTTGCAAACAGGATCTCAAAGCTGATTGAAGAATCC
TCTAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCCGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGC
TGATGTAGACCAGGATGAAAGAATGACAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTGC
AAAACCGAGAAACAGCTGAGTCTAGCCAGACCCCTGAGCGGCTGATTCAATTTGGGACCTTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCC
CAAGAAAAATATAATTCTATTGAATATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGA
TAGTAAAAGAAATGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTCGTGGAGAAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAA
CTTTGGCAGAATACTTCCCAAGGCGCTTCCTTGATGATAGTCAAGGAGAAGCACTTGAAATCGTCACGTGTCACATTGTGGACATGGTGGAAGATGATGATGTCCCTGCT
AGTTCCTCGGAACGGTGGCAAGTCCAGGAGACTTATCCTCTTTCAGCATAA
Protein sequenceShow/hide protein sequence
MVESASKARAMTKPSSIETLGMDCNSVYNSFRRLCSISFFVGYCAIFSICCVVIWNLFSNTSTMFLIDNRFLWGVHDGSAPVAPALAVNIGEDHTPLAVANRISKLIEES
SKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMTEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPERLIQFGTFDPVVVRFRKEATMKGS
QEKYNSIEYENEGWTLVVRRKKQKQSYARKESRLFRDSKRNVKSQRKKGKKKSRRSKPVVEKSEDFFCPPPPITLAEYFPRRFLDDSQGEALEIVTCHIVDMVEDDDVPA
SSSERWQVQETYPLSA