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Spg009525 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009525
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold9:25448608..25450096
RNA-Seq ExpressionSpg009525
SyntenySpg009525
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037079.1 suppressor of mec-8 and unc-52 protein-like protein 1 [Cucumis melo var. makuwa]1.8e-1334.03Show/hide
Query:  RLVVVSSAEKSRVLSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLCN---------------ALWHRIICPLNPSPISESIFSAL
        RL ++ S     +LS IL Y   +F++   +C S+EK M+DF+W+  ++G+  H    +L N                   R +   NP+P     +   
Subjt:  RLVVVSSAEKSRVLSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLCN---------------ALWHRIICPLNPSPISESIFSAL

Query:  WKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCR
        +++K  KKVRFFIWQ++ G+++T+D+L R+ P L+GPF C+LCR
Subjt:  WKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCR

KAA0054311.1 golgin subfamily A member 6-like protein 22 isoform X2 [Cucumis melo var. makuwa]8.5e-1146.74Show/hide
Query:  LCNALWHRIICPLNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICFGAANVVSLFGVL
        +C +L+   I  L+PSP  E +F  + + KVPKKVRFF WQ++ GR+  +D+L RK  SLI PFCCILCR       I FG A +   +G L
Subjt:  LCNALWHRIICPLNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICFGAANVVSLFGVL

RVW62475.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.1e-0930.34Show/hide
Query:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVH----SVY------WDLCNALWHRIICPLNP--------SPISESIFSALWKVKVPKKVR
        LS I +YF S+F+   S+ + +EK+ ++F+W    +GK  H    S+Y      WD    +     CP           SP    +F  LW  KVP KV+
Subjt:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVH----SVY------WDLCNALWHRIICPLNP--------SPISESIFSALWKVKVPKKVR

Query:  FFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCRMRRKALTICF
           W + HG+++T D+L  + P   + P  CILC+   +++ + F
Subjt:  FFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCRMRRKALTICF

RVW93876.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.6e-0925.44Show/hide
Query:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLC---------------------------------NALWHRIICPLN-------
        LS I +YF S+F+   S+ + +EK+ +DF+W    KGK  H + W++                                  + LWH++I  +        
Subjt:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLC---------------------------------NALWHRIICPLN-------

Query:  ------------PSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCR
                    P      +F  LW  KVP KV+   W + HG+++T D+L  + P   + P  CILC+
Subjt:  ------------PSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCR

XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]8.0e-0942.65Show/hide
Query:  LNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICF
        L+P+P  E +F  +W   VPKKV FFIWQ++  +++ +D+L R+  SL+G FCC+LC+     L   F
Subjt:  LNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICF

TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025433.9e-0942.65Show/hide
Query:  LNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICF
        L+P+P  E +F  +W   VPKKV FFIWQ++  +++ +D+L R+  SL+G FCC+LC+     L   F
Subjt:  LNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICF

A0A438FRA1 Transposon TX1 uncharacterized 149 kDa protein1.0e-0930.34Show/hide
Query:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVH----SVY------WDLCNALWHRIICPLNP--------SPISESIFSALWKVKVPKKVR
        LS I +YF S+F+   S+ + +EK+ ++F+W    +GK  H    S+Y      WD    +     CP           SP    +F  LW  KVP KV+
Subjt:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVH----SVY------WDLCNALWHRIICPLNP--------SPISESIFSALWKVKVPKKVR

Query:  FFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCRMRRKALTICF
           W + HG+++T D+L  + P   + P  CILC+   +++ + F
Subjt:  FFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCRMRRKALTICF

A0A438IAY6 Transposon TX1 uncharacterized 149 kDa protein7.8e-1025.44Show/hide
Query:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLC---------------------------------NALWHRIICPLN-------
        LS I +YF S+F+   S+ + +EK+ +DF+W    KGK  H + W++                                  + LWH++I  +        
Subjt:  LSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLC---------------------------------NALWHRIICPLN-------

Query:  ------------PSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCR
                    P      +F  LW  KVP KV+   W + HG+++T D+L  + P   + P  CILC+
Subjt:  ------------PSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMP-SLIGPFCCILCR

A0A5A7T6T0 Suppressor of mec-8 and unc-52 protein-like protein 18.9e-1434.03Show/hide
Query:  RLVVVSSAEKSRVLSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLCN---------------ALWHRIICPLNPSPISESIFSAL
        RL ++ S     +LS IL Y   +F++   +C S+EK M+DF+W+  ++G+  H    +L N                   R +   NP+P     +   
Subjt:  RLVVVSSAEKSRVLSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLCN---------------ALWHRIICPLNPSPISESIFSAL

Query:  WKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCR
        +++K  KKVRFFIWQ++ G+++T+D+L R+ P L+GPF C+LCR
Subjt:  WKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCR

A0A5A7UL95 Golgin subfamily A member 6-like protein 22 isoform X24.1e-1146.74Show/hide
Query:  LCNALWHRIICPLNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICFGAANVVSLFGVL
        +C +L+   I  L+PSP  E +F  + + KVPKKVRFF WQ++ GR+  +D+L RK  SLI PFCCILCR       I FG A +   +G L
Subjt:  LCNALWHRIICPLNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICFGAANVVSLFGVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGGTGAACATCGACCTAAAGGTGTTCCACCTTCGCAAGATTGGGAGTGGGAAAAAAGTGAAGTTGGAAGAACAGAGGTTTCTAGAATTGGAATTGGGAACACT
AGCTTGGATTAGAGATCGTTTGGTTGTTGTTTCATCAGCAGAAAAGTCTCGAGTGTTGAGCGACATTCTGACATACTTTTTCTCCATCTTTAGAGCCTCCGGTTCGATGT
GCAATTCTTTAGAGAAGGTTATGAAGGATTTTATTTGGGAAGAGGTTGATAAGGGGAAGACTGTGCATTCGGTTTATTGGGATTTGTGCAATGCCTTGTGGCATAGGATT
ATCTGTCCTTTGAATCCCTCTCCGATTAGTGAGTCAATCTTTTCTGCTTTATGGAAGGTGAAAGTCCCAAAGAAGGTTCGATTTTTCATTTGGCAAATCATCCACGGAAG
AATTCATACTTTAGATCAGCTTTCAAGAAAGATGCCTTCTTTGATTGGTCCGTTTTGTTGCATTCTTTGTCGGATGCGGAGGAAGGCCTTGACAATTTGCTTTGGAGCTG
CAAATGTGGTTAGTCTATTTGGTGTTCTTTTCTTGAAGAGGAAGGAAAGTTCTTATGGCAGGCAAGGATCTACGTTGCCTTGGGAGGTTTATAGGGTGAGAGAAATCATA
GGACCTTTAGGGGACTTGAGAGAAATCCTAGTGAAGTTCAATCCATTGCTAGATTTCATGCTTCTCTGTGGGCATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGAAGGTGAACATCGACCTAAAGGTGTTCCACCTTCGCAAGATTGGGAGTGGGAAAAAAGTGAAGTTGGAAGAACAGAGGTTTCTAGAATTGGAATTGGGAACACT
AGCTTGGATTAGAGATCGTTTGGTTGTTGTTTCATCAGCAGAAAAGTCTCGAGTGTTGAGCGACATTCTGACATACTTTTTCTCCATCTTTAGAGCCTCCGGTTCGATGT
GCAATTCTTTAGAGAAGGTTATGAAGGATTTTATTTGGGAAGAGGTTGATAAGGGGAAGACTGTGCATTCGGTTTATTGGGATTTGTGCAATGCCTTGTGGCATAGGATT
ATCTGTCCTTTGAATCCCTCTCCGATTAGTGAGTCAATCTTTTCTGCTTTATGGAAGGTGAAAGTCCCAAAGAAGGTTCGATTTTTCATTTGGCAAATCATCCACGGAAG
AATTCATACTTTAGATCAGCTTTCAAGAAAGATGCCTTCTTTGATTGGTCCGTTTTGTTGCATTCTTTGTCGGATGCGGAGGAAGGCCTTGACAATTTGCTTTGGAGCTG
CAAATGTGGTTAGTCTATTTGGTGTTCTTTTCTTGAAGAGGAAGGAAAGTTCTTATGGCAGGCAAGGATCTACGTTGCCTTGGGAGGTTTATAGGGTGAGAGAAATCATA
GGACCTTTAGGGGACTTGAGAGAAATCCTAGTGAAGTTCAATCCATTGCTAGATTTCATGCTTCTCTGTGGGCATCGATGA
Protein sequenceShow/hide protein sequence
MTKVNIDLKVFHLRKIGSGKKVKLEEQRFLELELGTLAWIRDRLVVVSSAEKSRVLSDILTYFFSIFRASGSMCNSLEKVMKDFIWEEVDKGKTVHSVYWDLCNALWHRI
ICPLNPSPISESIFSALWKVKVPKKVRFFIWQIIHGRIHTLDQLSRKMPSLIGPFCCILCRMRRKALTICFGAANVVSLFGVLFLKRKESSYGRQGSTLPWEVYRVREII
GPLGDLREILVKFNPLLDFMLLCGHR