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Spg009534 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009534
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationscaffold9:24411325..24413328
RNA-Seq ExpressionSpg009534
SyntenySpg009534
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030487620.1 uncharacterized protein LOC115704559 [Cannabis sativa]1.1e-1057.75Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        Q Q   T++LE+L+R+ M KNDAVIQSQ  SLR+LE Q+GQ+A ++KNRP  TLP +TENP R+G    KA
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

XP_030494694.1 uncharacterized protein LOC115710474 [Cannabis sativa]3.3e-1060.94Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPERE
        Q Q   T++LE+L+R+ MTKNDAVIQSQ  SLR+LE Q+GQ+A ++KNRP  TLP +TENP R+
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPERE

XP_030498047.1 uncharacterized protein LOC115713707 [Cannabis sativa]1.9e-1057.75Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        Q Q   T++LE+L+R+ M KNDAVIQSQ  SLR+LE Q+GQ+A  +KNRP  TLP +TENP R+G    KA
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

XP_030507648.1 uncharacterized protein LOC115722545 [Cannabis sativa]1.1e-1057.75Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        Q Q   T++LE+L+R+ M KNDAVIQSQ  SLR+LE Q+GQ+A ++KNRP  TLP +TENP R+G    KA
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

XP_030509259.1 uncharacterized protein LOC115723937 [Cannabis sativa]1.1e-1057.75Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        Q Q   T++LE+L+R+ M KNDAVIQSQ  SLR+LE Q+GQ+A ++KNRP  TLP +TENP R+G    KA
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

TrEMBL top hitse value%identityAlignment
A0A6J1DXH8 uncharacterized protein LOC1110254742.2e-0761.11Show/hide
Query:  MTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        M KN+A +QSQTTSLR+LE Q+GQ+A ++KNRP+ TLP +TE P+REG  + KA
Subjt:  MTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

A0A6J1DYG0 uncharacterized protein LOC1110257641.5e-0851.52Show/hide
Query:  STTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        + +NLEN+++E M + DAVIQSQ  S+R+ E+Q+GQ+A E+KNRP  + P +TE P+REG  + KA
Subjt:  STTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

A0A6J1G7Q6 uncharacterized protein LOC1114515981.4e-0957.58Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGL
        Q Q  S T LE+L++E M +NDAVIQSQ  SLR+LE Q+GQ+A E++NRP+  LP +TE P+REG+
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGL

A0A6J1GJ68 uncharacterized protein LOC1114543441.3e-0734.06Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKASIDPKLKVISKPSPPSRKSGMQHSTCSAS
        Q Q  S T++E+L++E M KND VIQSQ  SL++LE Q+GQ+A E++NRP+  LP +TE P+REG  + +A      K I      + + G  HS  +A 
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKASIDPKLKVISKPSPPSRKSGMQHSTCSAS

Query:  TLSKTQGKSPQPSTRAGTRSREWENELRIAAKKSRQAI
        T  +    + Q          + + +++  A   +++I
Subjt:  TLSKTQGKSPQPSTRAGTRSREWENELRIAAKKSRQAI

A0A6J1H7K8 uncharacterized protein LOC1114611671.0e-0953.52Show/hide
Query:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA
        Q Q    T+LE+L++E M KND VIQSQ  SLR+LE Q+GQ+A E++NRP+  LP +TE P+REG+ + +A
Subjt:  QVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTGCAACCCCAATCAACAACAAATCTGGAGAATCTTCTGAGGGAACTAATGACCAAGAATGATGCTGTAATTCAAAGTCAAACAACTTCCTTGAGGAGTCTTGA
ATCTCAAATTGGGCAGATAGCTAAGGAAATAAAGAACAGACCAATAAGAACCCTACCACGCAATACAGAGAACCCGGAAAGAGAGGGCCTAAGCAAGGATAAGGCCTCCA
TTGACCCCAAGTTGAAGGTGATTTCAAAACCCTCTCCTCCTTCACGAAAATCTGGAATGCAACATTCTACTTGTTCGGCCTCTACTCTGTCGAAAACTCAAGGTAAGTCT
CCCCAACCATCAACTCGTGCAGGAACGCGCTCAAGAGAGTGGGAGAATGAATTGAGAATAGCTGCTAAGAAAAGTCGTCAAGCCATTGAGGACGCTACTATGGAAGTTGA
AGAGGAAGAAAAAGAAAAGGAGGTGCCCTTGGTCCTTAAACTGAAAGTTGTGCGAATAAAGGAAAGGGAAGAAACAGAGAAAGTGGGAGTGAAATATTTTAGAAGGAAGA
AGAAGGATGAAGCTGAACCATGCATACAGGTTGCAGCCGCAAATGTGGAGCAACTTAAGAATCTAACTGCAGGTCGACCTGAAATTGCGACCGCAAACATCAGTGGAGCA
GAAGAAGCAGTGCCAGTTCCTGAGGCACAAACCAGAAAGGATGTGCCCGCATTTGGGTGCAAATGCAGGTCCAGACTTCTAATTCAACTACAGATCCCTCTAAGCTTAGA
GTCAAATGAACGACACGATGTGGTCCAGAGGGAGTTTGCCGTTGCAAATGTGGCACAAACAGAGCAAGAACCAGAGATTGCACCAGTTCCTGAGGTGCAATCTAATGAGC
AAATCCCACCACCACCAAATGAAGAAGAAAATGTGTTCGAGGACTTGTTCGAGCACCATAATAAAGCAATGTTCGAGGACCTATTCAAGCATGAGCAAGAAGAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTGCAACCCCAATCAACAACAAATCTGGAGAATCTTCTGAGGGAACTAATGACCAAGAATGATGCTGTAATTCAAAGTCAAACAACTTCCTTGAGGAGTCTTGA
ATCTCAAATTGGGCAGATAGCTAAGGAAATAAAGAACAGACCAATAAGAACCCTACCACGCAATACAGAGAACCCGGAAAGAGAGGGCCTAAGCAAGGATAAGGCCTCCA
TTGACCCCAAGTTGAAGGTGATTTCAAAACCCTCTCCTCCTTCACGAAAATCTGGAATGCAACATTCTACTTGTTCGGCCTCTACTCTGTCGAAAACTCAAGGTAAGTCT
CCCCAACCATCAACTCGTGCAGGAACGCGCTCAAGAGAGTGGGAGAATGAATTGAGAATAGCTGCTAAGAAAAGTCGTCAAGCCATTGAGGACGCTACTATGGAAGTTGA
AGAGGAAGAAAAAGAAAAGGAGGTGCCCTTGGTCCTTAAACTGAAAGTTGTGCGAATAAAGGAAAGGGAAGAAACAGAGAAAGTGGGAGTGAAATATTTTAGAAGGAAGA
AGAAGGATGAAGCTGAACCATGCATACAGGTTGCAGCCGCAAATGTGGAGCAACTTAAGAATCTAACTGCAGGTCGACCTGAAATTGCGACCGCAAACATCAGTGGAGCA
GAAGAAGCAGTGCCAGTTCCTGAGGCACAAACCAGAAAGGATGTGCCCGCATTTGGGTGCAAATGCAGGTCCAGACTTCTAATTCAACTACAGATCCCTCTAAGCTTAGA
GTCAAATGAACGACACGATGTGGTCCAGAGGGAGTTTGCCGTTGCAAATGTGGCACAAACAGAGCAAGAACCAGAGATTGCACCAGTTCCTGAGGTGCAATCTAATGAGC
AAATCCCACCACCACCAAATGAAGAAGAAAATGTGTTCGAGGACTTGTTCGAGCACCATAATAAAGCAATGTTCGAGGACCTATTCAAGCATGAGCAAGAAGAGGAATAG
Protein sequenceShow/hide protein sequence
MQVQPQSTTNLENLLRELMTKNDAVIQSQTTSLRSLESQIGQIAKEIKNRPIRTLPRNTENPEREGLSKDKASIDPKLKVISKPSPPSRKSGMQHSTCSASTLSKTQGKS
PQPSTRAGTRSREWENELRIAAKKSRQAIEDATMEVEEEEKEKEVPLVLKLKVVRIKEREETEKVGVKYFRRKKKDEAEPCIQVAAANVEQLKNLTAGRPEIATANISGA
EEAVPVPEAQTRKDVPAFGCKCRSRLLIQLQIPLSLESNERHDVVQREFAVANVAQTEQEPEIAPVPEVQSNEQIPPPPNEEENVFEDLFEHHNKAMFEDLFKHEQEEE