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Spg009542 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009542
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit E-like
Genome locationscaffold9:24757940..24762915
RNA-Seq ExpressionSpg009542
SyntenySpg009542
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3646753.1 Transcription factor VIP1 [Capsicum annuum]1.6e-0628.57Show/hide
Query:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL-LYPSKKMIEAKEVNMDDII-KGKD
        + LW + ++ + + L +      +I   +VK   ++G   + ST I+ + I+P  E+A+SL+   L +  K  D+ L PS ++  AK + + DI  +  D
Subjt:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL-LYPSKKMIEAKEVNMDDII-KGKD

Query:  NKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEICSV
        N+ E+S  +++L+++  K+Y FL R+D     DRA ++ + +E+  V
Subjt:  NKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEICSV

KAG5576225.1 hypothetical protein H5410_056359, partial [Solanum commersonii]5.7e-0731.72Show/hide
Query:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK-MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKGK--
        + LW D   N+G +L++    Q ++V+ +V+   ++G   IS+  +S + INP  ++A  L+    +IK  K      PSK M +A +V + +II GK  
Subjt:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK-MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKGK--

Query:  DNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEI
        D +KE+S +++ LV  KDK++ FL  +D    +    + ++ QEI
Subjt:  DNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEI

OIT36661.1 replication protein a 70 kda dna-binding subunit b [Nicotiana attenuata]1.1e-0538.14Show/hide
Query:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESL-KMQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG
        L LW DLAE EG+ LE    ++ V+   + K   F+G+  +S+T +S + I P  E+A++L K    +K  K++  L PS+ M  A+EV + DII G
Subjt:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESL-KMQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG

XP_015167697.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Solanum tuberosum]1.6e-0625.4Show/hide
Query:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK-MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG--K
        + LW D AEN+G +L++    + ++ + +V+   ++G   IS+  +S + INP  ++A  L+    +I+    + ++ P+K M  A EV +D I+ G   
Subjt:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK-MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG--K

Query:  DNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEICSV-----------ISMAGKRHKQGEEKRAIETEENKKRAKVTE
        +++KE+  +++ LV++KDK++ FL R+D    +   R+ ++ +EI  +           +    K  K+ ++    E + N+K+ K  +
Subjt:  DNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEICSV-----------ISMAGKRHKQGEEKRAIETEENKKRAKVTE

XP_022155232.1 replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]7.3e-3170.87Show/hide
Query:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK--MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDII
        NTIKL LWDDLAENEGQYLEENG+ Q+VI+ITNV+P +FEGE++ISS+ ISV+AINP +   E+LK  M TL +D+KL DLLYPSKK++EAKEV+MDD+I
Subjt:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK--MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDII

Query:  KGK
        KGK
Subjt:  KGK

TrEMBL top hitse value%identityAlignment
A0A314L4L3 Replication protein a 70 kDa dna-binding subunit b5.2e-0638.14Show/hide
Query:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESL-KMQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG
        L LW DLAE EG+ LE    ++ V+   + K   F+G+  +S+T +S + I P  E+A++L K    +K  K++  L PS+ M  A+EV + DII G
Subjt:  LALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESL-KMQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKG

A0A5J4ZI14 REPA_OB_2 domain-containing protein7.5e-0524.84Show/hide
Query:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK------MQTLIKDRKLNDLLY--PSKKMIEAKEV
        +++ + LW D+A NEGQ L+EN   + +IV++N+    ++G+  +S+T +S I  +P  E+ + LK      ++ +  + K+  +L+  P+  +I     
Subjt:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK------MQTLIKDRKLNDLLY--PSKKMIEAKEV

Query:  NMDDIIKGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQE
         + D I      K +S  ++ +V  K   Y FL   ++V  S   +   ++ +
Subjt:  NMDDIIKGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQE

A0A5J4ZXX7 Protein kinase domain-containing protein1.5e-0526.09Show/hide
Query:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL--LYPSKKMIEAKEVNMDDII
        +++ + LW D+A NEGQ LEEN   + +I+++++    ++G+  +S+T +S I  +P   +A+ LK           D+  L   KK+ +AKE+N+ D++
Subjt:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL--LYPSKKMIEAKEVNMDDII

Query:  KGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDR
            +            + ++  YYF   +D +  +D+
Subjt:  KGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDR

A0A5J5AYF5 Uncharacterized protein4.4e-0526.81Show/hide
Query:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL--LYPSKKMIEAKEVNMDDII
        +++ + LW D+A NEGQ L+EN   + +IV++N+    ++G+  +S+T +S I  +P   + + LK           D+  L   KK+ +AKE+N+ D++
Subjt:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLKMQTLIKDRKLNDL--LYPSKKMIEAKEVNMDDII

Query:  KGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDR
                         + ++  YYF   +D V + D+
Subjt:  KGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDR

A0A6J1DNS8 replication protein A 70 kDa DNA-binding subunit E-like3.6e-3170.87Show/hide
Query:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK--MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDII
        NTIKL LWDDLAENEGQYLEENG+ Q+VI+ITNV+P +FEGE++ISS+ ISV+AINP +   E+LK  M TL +D+KL DLLYPSKK++EAKEV+MDD+I
Subjt:  NTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISSTVISVIAINPPVERAESLK--MQTLIKDRKLNDLLYPSKKMIEAKEVNMDDII

Query:  KGK
        KGK
Subjt:  KGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGAAACGGACGGACTGAGGGAGCCGGGCCAAGGTCGGAAGGATCGGGCCTTTGCCCGATCCCATGCTCGGCCTCGGCATTTAGTCGAGGTGACCTACACCACAC
CAGTGTGCAGCAGTTTACTGGTTTTGCAGGTCACGTCTTCCCCGCCTTGAACAAATTCACTATCGGTGTCACGTTTAATACAATAAAATTGGCATTATGGGACGATTTAG
CTGAAAATGAAGGACAATATCTAGAGGAAAATGGGCAAGCACAAAGTGTTATTGTAATCACCAATGTAAAGCCTATTGAATTTGAAGGTGAGATAACCATATCATCTACA
GTAATTAGCGTTATTGCCATAAATCCTCCCGTCGAGAGAGCAGAATCATTGAAGATGCAAACTCTTATAAAAGACCGAAAGTTGAATGATCTTTTATATCCATCCAAAAA
GATGATAGAAGCAAAAGAGGTCAACATGGATGACATTATCAAAGGAAAAGATAATAAAAAAGAAAAAAGTGAGCATTTTCAGAATTTGGTGGTAGCAAAAGATAAGAAAT
ACTACTTCTTAGGCAGAATGGACAAAGTAGGAGAGAGTGATCGTGCACGTAAACAAATAGTTGTTCAAGAAATTTGCAGTGTCATTTCGATGGCTGGCAAAAGACACAAA
CAAGGTGAAGAGAAGAGAGCAATTGAAACAGAAGAGAACAAAAAACGAGCAAAAGTAACAGAAATGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGAAACGGACGGACTGAGGGAGCCGGGCCAAGGTCGGAAGGATCGGGCCTTTGCCCGATCCCATGCTCGGCCTCGGCATTTAGTCGAGGTGACCTACACCACAC
CAGTGTGCAGCAGTTTACTGGTTTTGCAGGTCACGTCTTCCCCGCCTTGAACAAATTCACTATCGGTGTCACGTTTAATACAATAAAATTGGCATTATGGGACGATTTAG
CTGAAAATGAAGGACAATATCTAGAGGAAAATGGGCAAGCACAAAGTGTTATTGTAATCACCAATGTAAAGCCTATTGAATTTGAAGGTGAGATAACCATATCATCTACA
GTAATTAGCGTTATTGCCATAAATCCTCCCGTCGAGAGAGCAGAATCATTGAAGATGCAAACTCTTATAAAAGACCGAAAGTTGAATGATCTTTTATATCCATCCAAAAA
GATGATAGAAGCAAAAGAGGTCAACATGGATGACATTATCAAAGGAAAAGATAATAAAAAAGAAAAAAGTGAGCATTTTCAGAATTTGGTGGTAGCAAAAGATAAGAAAT
ACTACTTCTTAGGCAGAATGGACAAAGTAGGAGAGAGTGATCGTGCACGTAAACAAATAGTTGTTCAAGAAATTTGCAGTGTCATTTCGATGGCTGGCAAAAGACACAAA
CAAGGTGAAGAGAAGAGAGCAATTGAAACAGAAGAGAACAAAAAACGAGCAAAAGTAACAGAAATGAATTAA
Protein sequenceShow/hide protein sequence
MSGNGRTEGAGPRSEGSGLCPIPCSASAFSRGDLHHTSVQQFTGFAGHVFPALNKFTIGVTFNTIKLALWDDLAENEGQYLEENGQAQSVIVITNVKPIEFEGEITISST
VISVIAINPPVERAESLKMQTLIKDRKLNDLLYPSKKMIEAKEVNMDDIIKGKDNKKEKSEHFQNLVVAKDKKYYFLGRMDKVGESDRARKQIVVQEICSVISMAGKRHK
QGEEKRAIETEENKKRAKVTEMN