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Spg009634 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg009634
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold7:9140610..9142404
RNA-Seq ExpressionSpg009634
SyntenySpg009634
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274760.1 unnamed protein product [Prunus armeniaca]1.1e-0626.87Show/hide
Query:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN
        D  S W  M   LN  E    AI      LW IW  RN A  D  +ADP +++ L+ K ++E R                                L  N
Subjt:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN

Query:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS
             S     GG+ WVIRDS    +  G +      S   +E+LAIR  L             IIVE+D+ + I  LN      SD + ++ ++  L +
Subjt:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS

Query:  IVGVIAFSKCPRSGKIFAHFLVRAAAR
         +  ++F   PRS    AH +   A++
Subjt:  IVGVIAFSKCPRSGKIFAHFLVRAAAR

CAB4274761.1 unnamed protein product [Prunus armeniaca]1.1e-0626.87Show/hide
Query:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN
        D  S W  M   LN  E    AI      LW IW  RN A  D  +ADP +++ L+ K ++E R                                L  N
Subjt:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN

Query:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS
             S     GG+ WVIRDS    +  G +      S   +E+LAIR  L             IIVE+D+ + I  LN      SD + ++ ++  L +
Subjt:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS

Query:  IVGVIAFSKCPRSGKIFAHFLVRAAAR
         +  ++F   PRS    AH +   A++
Subjt:  IVGVIAFSKCPRSGKIFAHFLVRAAAR

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]5.7e-0626.74Show/hide
Query:  LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQR---------------------------KRLDTNLSFCSSENLSRGGLAWVIRDSSRSPVQVGCKK
        LW IW  RN A  ++ KADPI+   L+   + E R                             L  N        L RGG+ WVIRDS    +  G + 
Subjt:  LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQR---------------------------KRLDTNLSFCSSENLSRGGLAWVIRDSSRSPVQVGCKK

Query:  INRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSKCPRSGKIFAH
          R  S   +E+LAIR  L    +    +   ++VE+D    I  LN +    SD + ++ +++ L +    ++F   P+S    AH
Subjt:  INRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSKCPRSGKIFAH

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.2e-0925.93Show/hide
Query:  DKLNKEETEEAAIMLWTIWNYRNKA-------------------------TNDNTKA----DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL
        DK  +EE   + I+ W IW  RNK+                          N N K       + LIR I+ N   Q K       +L+TN ++ +  N 
Subjt:  DKLNKEETEEAAIMLWTIWNYRNKA-------------------------TNDNTKA----DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL

Query:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSK
          GG+ W++RD     ++  C+ I    +I  LE++AI EGL+   +  +E   PI +E+D+ E I  L+ +C++ ++   ++ E+  +   + +++   
Subjt:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSK

Query:  CPRSGKIFAHFLVRAA
          R     AH L R A
Subjt:  CPRSGKIFAHFLVRAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-0624.43Show/hide
Query:  DKLNKEETEEAAIMLWTIWNYRNKA---------------------------TNDNTKA--DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL
        DK  +EE   + I+ W IW  RNK+                           TN   K+    + LIR I  N   + K       +L+T+ ++ +  N 
Subjt:  DKLNKEETEEAAIMLWTIWNYRNKA---------------------------TNDNTKA--DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL

Query:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISS-----GRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGV
          GG+ W++RD     ++  C+ I    +I  LE++AI EGL+           +E   PI +E+D+ E I  L+ +C++ ++   ++ E+  +   + +
Subjt:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISS-----GRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGV

Query:  IAFSKCPRSGKIFAHFLVRAA
        ++     R     AH L R A
Subjt:  IAFSKCPRSGKIFAHFLVRAA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.6e-0925.93Show/hide
Query:  DKLNKEETEEAAIMLWTIWNYRNKA-------------------------TNDNTKA----DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL
        DK  +EE   + I+ W IW  RNK+                          N N K       + LIR I+ N   Q K       +L+TN ++ +  N 
Subjt:  DKLNKEETEEAAIMLWTIWNYRNKA-------------------------TNDNTKA----DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL

Query:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSK
          GG+ W++RD     ++  C+ I    +I  LE++AI EGL+   +  +E   PI +E+D+ E I  L+ +C++ ++   ++ E+  +   + +++   
Subjt:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSK

Query:  CPRSGKIFAHFLVRAA
          R     AH L R A
Subjt:  CPRSGKIFAHFLVRAA

A0A6J1DSV1 uncharacterized protein LOC1110236085.5e-0724.43Show/hide
Query:  DKLNKEETEEAAIMLWTIWNYRNKA---------------------------TNDNTKA--DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL
        DK  +EE   + I+ W IW  RNK+                           TN   K+    + LIR I  N   + K       +L+T+ ++ +  N 
Subjt:  DKLNKEETEEAAIMLWTIWNYRNKA---------------------------TNDNTKA--DPIQLIRLIKKNLAEQRK-------RLDTNLSFCSSENL

Query:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISS-----GRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGV
          GG+ W++RD     ++  C+ I    +I  LE++AI EGL+           +E   PI +E+D+ E I  L+ +C++ ++   ++ E+  +   + +
Subjt:  SRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISS-----GRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGV

Query:  IAFSKCPRSGKIFAHFLVRAA
        ++     R     AH L R A
Subjt:  IAFSKCPRSGKIFAHFLVRAA

A0A6J5UE59 Reverse transcriptase domain-containing protein5.5e-0726.87Show/hide
Query:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN
        D  S W  M   LN  E    AI      LW IW  RN A  D  +ADP +++ L+ K ++E R                                L  N
Subjt:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN

Query:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS
             S     GG+ WVIRDS    +  G +      S   +E+LAIR  L             IIVE+D+ + I  LN      SD + ++ ++  L +
Subjt:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS

Query:  IVGVIAFSKCPRSGKIFAHFLVRAAAR
         +  ++F   PRS    AH +   A++
Subjt:  IVGVIAFSKCPRSGKIFAHFLVRAAAR

A0A6J5UF50 Uncharacterized protein5.5e-0726.87Show/hide
Query:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN
        D  S W  M   LN  E    AI      LW IW  RN A  D  +ADP +++ L+ K ++E R                                L  N
Subjt:  DMASIWDMMSDKLNKEETEEAAIM-----LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKR------------------------------LDTN

Query:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS
             S     GG+ WVIRDS    +  G +      S   +E+LAIR  L             IIVE+D+ + I  LN      SD + ++ ++  L +
Subjt:  LSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKINRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLAS

Query:  IVGVIAFSKCPRSGKIFAHFLVRAAAR
         +  ++F   PRS    AH +   A++
Subjt:  IVGVIAFSKCPRSGKIFAHFLVRAAAR

A0A6P5S2T0 uncharacterized protein LOC1107519132.7e-0626.74Show/hide
Query:  LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQR---------------------------KRLDTNLSFCSSENLSRGGLAWVIRDSSRSPVQVGCKK
        LW IW  RN A  ++ KADPI+   L+   + E R                             L  N        L RGG+ WVIRDS    +  G + 
Subjt:  LWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQR---------------------------KRLDTNLSFCSSENLSRGGLAWVIRDSSRSPVQVGCKK

Query:  INRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSKCPRSGKIFAH
          R  S   +E+LAIR  L    +    +   ++VE+D    I  LN +    SD + ++ +++ L +    ++F   P+S    AH
Subjt:  INRHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSKCPRSGKIFAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTCTTAATTTGTGCAAAGAGGATGTCGATATGGCTTCGATATGGGATATGATGTCAGACAAGCTAAACAAAGAAGAAACAGAGGAGGCCGCAATCATGCTATG
GACGATTTGGAATTACAGGAACAAAGCAACAAATGACAACACAAAGGCAGATCCCATCCAATTAATTAGACTGATTAAGAAGAATTTGGCGGAGCAAAGGAAGCGCTTGG
ATACTAACCTGAGCTTTTGCAGCTCGGAGAACTTGTCGAGAGGTGGGCTGGCTTGGGTTATTCGTGATTCTTCAAGGTCTCCAGTCCAAGTTGGCTGCAAGAAGATCAAC
AGGCATTGGTCGATAAAATCTCTGGAAATGCTTGCAATCAGAGAAGGTTTGAAGATGTACATATCTTCGGGAAGGGAAAGGAAGCCGCCAATAATCGTGGAAGCGGATGC
CTCAGAAGTTATCAAAGCTCTGAACTATGAGTGCGAAGAATTATCGGACACAAAGGTCGTGATGCACGAAGTCGAATCTCTGGCCTCAATCGTTGGAGTAATCGCATTCT
CGAAATGCCCTAGGAGCGGAAAAATTTTTGCGCACTTTCTCGTGCGAGCGGCGGCAAGATTGTTGTCAGTGTCGTCGATGTCGGCTGGAACGATCGATCTCGAGTCTGAA
GCTTCAATGGATTCCTGGAGCTTGAAGTCTTCTAAGTTTGAAAGAGTCTTCAGTCTTCAAGAAGTGTTCAGTGCTTGGAAACTTATAGATTTCAGAGAGTCTTCAGTCTT
TCGTTTTGGGGGAATTTCTCTGAATTCTCTAAGTCTGGTTGAGAGCTCCAAAATTCTGAACCCTGGAAATGGTCGAGAGCTCCTCTATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGTCTTAATTTGTGCAAAGAGGATGTCGATATGGCTTCGATATGGGATATGATGTCAGACAAGCTAAACAAAGAAGAAACAGAGGAGGCCGCAATCATGCTATG
GACGATTTGGAATTACAGGAACAAAGCAACAAATGACAACACAAAGGCAGATCCCATCCAATTAATTAGACTGATTAAGAAGAATTTGGCGGAGCAAAGGAAGCGCTTGG
ATACTAACCTGAGCTTTTGCAGCTCGGAGAACTTGTCGAGAGGTGGGCTGGCTTGGGTTATTCGTGATTCTTCAAGGTCTCCAGTCCAAGTTGGCTGCAAGAAGATCAAC
AGGCATTGGTCGATAAAATCTCTGGAAATGCTTGCAATCAGAGAAGGTTTGAAGATGTACATATCTTCGGGAAGGGAAAGGAAGCCGCCAATAATCGTGGAAGCGGATGC
CTCAGAAGTTATCAAAGCTCTGAACTATGAGTGCGAAGAATTATCGGACACAAAGGTCGTGATGCACGAAGTCGAATCTCTGGCCTCAATCGTTGGAGTAATCGCATTCT
CGAAATGCCCTAGGAGCGGAAAAATTTTTGCGCACTTTCTCGTGCGAGCGGCGGCAAGATTGTTGTCAGTGTCGTCGATGTCGGCTGGAACGATCGATCTCGAGTCTGAA
GCTTCAATGGATTCCTGGAGCTTGAAGTCTTCTAAGTTTGAAAGAGTCTTCAGTCTTCAAGAAGTGTTCAGTGCTTGGAAACTTATAGATTTCAGAGAGTCTTCAGTCTT
TCGTTTTGGGGGAATTTCTCTGAATTCTCTAAGTCTGGTTGAGAGCTCCAAAATTCTGAACCCTGGAAATGGTCGAGAGCTCCTCTATTTATAG
Protein sequenceShow/hide protein sequence
MEGLNLCKEDVDMASIWDMMSDKLNKEETEEAAIMLWTIWNYRNKATNDNTKADPIQLIRLIKKNLAEQRKRLDTNLSFCSSENLSRGGLAWVIRDSSRSPVQVGCKKIN
RHWSIKSLEMLAIREGLKMYISSGRERKPPIIVEADASEVIKALNYECEELSDTKVVMHEVESLASIVGVIAFSKCPRSGKIFAHFLVRAAARLLSVSSMSAGTIDLESE
ASMDSWSLKSSKFERVFSLQEVFSAWKLIDFRESSVFRFGGISLNSLSLVESSKILNPGNGRELLYL